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Transformer-based de novo sequencing (Casanovo) + database searching with rescoring (Sage + Mokapot). For metaproteomics datasets

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Orthrus: an AI-powered, cloud-ready, and open-source hybrid approach for metaproteomics


orthrus_workflow_v2

Quick start

  • Go to orthrus_v1 folder and choose to open .ipynb files in Colab
  • A Github account will be needed for authorisation. Go to Github and get one if you haven't >_<

Documentation

  • under construction but please see Notebooks' annotations

FAQs

  1. Do I need a Google Colab subscription?
    Without any Colab+, general CPU runtime, T4 GPU, and TPU should still be accessible.
  2. Do I need a Google account?
    May make life easier. Colab can also access files in your Google drive (with permission).
  3. Help! Still unsure how to walk Orthrus.
    Open an issue or get in touch with me (preprint)

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Transformer-based de novo sequencing (Casanovo) + database searching with rescoring (Sage + Mokapot). For metaproteomics datasets

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