metadata_WGS_COMMON.toml

# Replicate sample annotation file: WGS
# https://docs.google.com/spreadsheets/d/15gLGL5FMV8gRt46ezc2Gmb-R1NbYsIGMssB0MyHkcwE/edit#gid=1753678626
# This file `config_EST.toml` shows feature-wise notation
# as opposed to COMMON-style notation in `config_EST_COMMON.toml`

[COMMON]
[COMMON.DATATYPE]
type = "WGS"

[COMMON.KEYWORD]
keyword = [
    "WGS",
    "STANDARD_DRAFT",
]

[COMMON.DBLINK]
project = "PRJDB90001"
biosample = "SAMD90000000"
"sequence read archive" = "DRR999900"


[COMMON.SUBMITTER]
contact = "Hanako Mishima"
consrtm = "Streptomyces flavus genome sequencing consortium"
ab_name = [
    "Mishima,H.",
    "Yamada,T.",
    "Park,C.S.",
    "Liu,G.Q.",
]
email = "mishima@ddbj.nig.ac.jp"
phone = "81-55-981-6853"
fax = "81-55-981-6849"
institute = "National Institute of Genetics"
department = "DNA Data Bank of Japan"
country = "Japan"
state = "Shizuoka"
city = "Mishima"
street = "Yata 1111"
zip = "411-8540"

[COMMON.REFERENCE]
ab_name = [
    "Mishima,H.",
    "Yamada,T.",
    "Park,C.S.",
    "Liu,G.Q.",
]
title = "Streptomyces flavus NBRC 12345 whole genome shotgun sequence"
status = "Unpublished"
year = "2020"

[COMMON.DATE]
hold_date = "20240501"

[COMMON.COMMENT]
line = [
    "Please visit our web page",
    "URL:http://www.ddbj.nig.ac.jp/",
]

[COMMON.ST_COMMENT]
tagset_id = "Genome-Assembly-Data"
"Assembly Method" = "Velvet v. 2.0"
"Assembly Name" = "Sfl_assembly01"
"Genome Coverage" = "60x"
"Sequencing Technology" = "454 GS FLX; ABI 3730"


## source feature is inserted under COMMON
[COMMON.source]
organism = "Streptomyces flavus"
mol_type = "genomic DNA"
culture_collection = "NBRC:12345"
strain = "NBRC:12345"
ff_definition = "@@[organism]@@ @@[strain]@@ DNA, @@[submitter_seqid]@@"
submitter_seqid = "@@[entry]@@"   # We can set `submitter_seqid` unlike the case in config_WGS.toml