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Cannot use DAPG as input - DAPG Segmentation Fault #28

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andrewmcroitoru opened this issue Nov 25, 2024 · 0 comments
Open

Cannot use DAPG as input - DAPG Segmentation Fault #28

andrewmcroitoru opened this issue Nov 25, 2024 · 0 comments

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@andrewmcroitoru
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I am trying to use the current version of DAPG (https://github.com/xqwen/dap) to finemap eQTL summary statistics, and I ultimately want to provide the DAPG output into fastenloc. However, I frequently get segmentation faults when running DAPG. I always get a segmentation fault from DAPG when running DAPG on the same inputs. Some inputs for some genes always work, while other inputs for other genes always fail. The segmentation faults do not seem to be a function of the number of SNPs I input, and happens regardless of how much memory I provide DAPG. Do you have any insight into how I may solve this issue?

I am running DAPG as follows: "./dap-g -d_z $summ_stats_file_tab -d_ld $ld_matrix_file -o $dapg_output_file -l $dapg_log_file"

Thank you!

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