Changelog

[0.1.3] - 2024-11-15

Changed

Change default mode (without --plasmid) to classifying all reads that carry ARGs.

[0.1.2] - 2024-11-01

Changed

Use total bitscores per cluster for determining final HSPs. This help reduce false positives in certain cases.
Switch from dok_matrix to coo_matrix for speed.

Fixed

Make database size checking more flexible.
Reduce peak memory usage.

[0.1.1] - 2024-09-03

Fixed

Fix a bug causing all reads not being classified when --plasmid is not given.

[0.1.0] - 2024-07-21

Added

Add option --plasmid for controlling whether plasmid reads should be classified.
Reduce plasmid detection cutoff from 0.9 to 0.5.
Increase max overlap identity filtering cutoff from 0.01 to 0.05.

[0.0.1] - 2024-06-30

Added

First release.