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Define initial pseudo-QTNs #105

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Lamoumni18 opened this issue Dec 2, 2024 · 0 comments
Open

Define initial pseudo-QTNs #105

Lamoumni18 opened this issue Dec 2, 2024 · 0 comments

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@Lamoumni18
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Lamoumni18 commented Dec 2, 2024

Hello everyone,
According to the original paper of FarmCPU, pseudo-QTNs are initially either left empty, or can be defined (markers in your data that are associated with candidate genes). I wonder if there is such option in the package (Is it the CV.FarmCPU argument ?), like to define a list of "pseudo-QTNs" to be used initially, instead of running a "blind" analysis. A comparison between the two methods would be interesting.
Thank you

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