scramble compression flags (bam to cram) #266
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…e (bam to cram) conversion command add arbitrary_flags parameter to scramble (bam to cram) conversion command
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What about using the existing |
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Using the b2c_compress_level parameter is a better solution. The "-s" flag could also be added there when needed. So I think there is no need for a p4 template change for cram compression. |
dozy
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Mar 28, 2022
Small change to support traction LIMS
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add -j (bzip2 compression) and -Z (lzma compression) flags to scramble (bam to cram) conversion command. Both are optional extras (not present by default)
add arbitrary_flags parameter to scramble (bam to cram) conversion command
Runs slowly, works