diff --git a/data/vtlib/fastq_s2_pi.json b/data/vtlib/fastq_s2_pi.json index 72de2b58..32039b93 100644 --- a/data/vtlib/fastq_s2_pi.json +++ b/data/vtlib/fastq_s2_pi.json @@ -45,7 +45,8 @@ "-R", {"subst":"fastq_s2_pi_RG_ID","required":true, "comment":"readgroup"}, "-1", {"subst":"fastq_s2_pi_fq1","required":true, "comment":"FASTQ read 1"}, "-2", {"subst":"fastq_s2_pi_fq2","required":true, "comment":"FASTQ read 2"}, - "-i", + {"select":"parse_casava_id", "default":"on", "select_range":[1], "cases":{ "on":["-i"], "off":[] }}, + {"subst":"parse_import_tags_flag", "ifnull":["-T", {"subst":"parse_import_tags","required":true,"ifnull":"*"}]}, "-u", "-O", "bam" ]