From 541b9aae1be21c005973be876f68af3993b2671b Mon Sep 17 00:00:00 2001 From: David K Jackson Date: Fri, 13 Sep 2024 08:45:36 +0100 Subject: [PATCH 1/2] container: bump samtools/htslib to 1.21 --- Dockerfile | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Dockerfile b/Dockerfile index f8414700..cc7d8a43 100644 --- a/Dockerfile +++ b/Dockerfile @@ -5,11 +5,11 @@ ARG BIOBAMBAM2_VERSION="2.0.185-release-20221211202123" ARG BWA_VERSION="0.7.18" ARG BWA_MEM2_VERSION="2.2.1" ARG DEFLATE_VERSION="1.20" -ARG HTSLIB_VERSION="1.20" +ARG HTSLIB_VERSION="1.21" ARG IO_LIB_VERSION="1.15.0" ARG LIBMAUS2_VERSION="2.0.813-release-20221210220409" ARG NPG_SEQ_COMMON_VERSION="51.1" -ARG SAMTOOLS_VERSION="1.20" +ARG SAMTOOLS_VERSION="1.21" ARG TEEPOT_VERSION="1.2.0" ARG PCAP_CORE_VERSION="5.7.0" From 637291e283e5f8efc7b21c14684d8443d8d27e86 Mon Sep 17 00:00:00 2001 From: David K Jackson Date: Fri, 13 Sep 2024 08:53:20 +0100 Subject: [PATCH 2/2] CI: bump actions/upload-artifact to v3 --- .github/workflows/testing_and_building_repo.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/testing_and_building_repo.yml b/.github/workflows/testing_and_building_repo.yml index 1e4524e4..270bc350 100644 --- a/.github/workflows/testing_and_building_repo.yml +++ b/.github/workflows/testing_and_building_repo.yml @@ -58,7 +58,7 @@ jobs: # Archive logs if failure - name: Archive CPAN logs if: ${{ failure() }} - uses: actions/upload-artifact@v2 + uses: actions/upload-artifact@v3 with: name: cpan_log path: /home/runner/.cpanm/work/*/build.log