From a53f90f0185188aa833e9db5eb51a8bb1b7333ba Mon Sep 17 00:00:00 2001 From: jmtcsngr Date: Tue, 17 Dec 2024 11:06:59 +0000 Subject: [PATCH] install libdevel-patchperl-perl in github runner --- .github/workflows/run-tests.yml | 3 ++- Changes | 1 + 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/.github/workflows/run-tests.yml b/.github/workflows/run-tests.yml index 3b984087..7afb8bef 100644 --- a/.github/workflows/run-tests.yml +++ b/.github/workflows/run-tests.yml @@ -34,7 +34,8 @@ jobs: sudo apt-get update # https://github.com/actions/runner-images/issues/2139 sudo apt-get remove -y nginx libgd3 - sudo apt-get install -y libgd-dev uuid-dev libgd-text-perl + # libdevel-patchperl-perl is needed for perlbrew + sudo apt-get install -y libgd-dev uuid-dev libgd-text-perl libdevel-patchperl-perl - name: "Install Miniforge" run: | diff --git a/Changes b/Changes index 6c57acf2..20ac6afd 100644 --- a/Changes +++ b/Changes @@ -1,5 +1,6 @@ LIST OF CHANGES FOR NPG-QC PACKAGE + - Fix perlbrew installation by installing libdevel-patchperl-perl in runner - Fixes/updates for lane-level RoboQC lane-level assessment: - Excluded study-specific lane-lane assessment in npg_qc::autoqc::check::review This helps to avoid uncertainty in evaluating lanes where samples belong to