From f1096a3393b4574c98da4ed69fd5e6bfd3708d8f Mon Sep 17 00:00:00 2001 From: Kevin Lewis Date: Wed, 23 May 2018 13:38:52 +0100 Subject: [PATCH] change naming of spatial_filter stats files to _*.spatial_filter.stats for easier identificaton --- Changes | 1 + lib/npg_qc/autoqc/checks/spatial_filter.pm | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/Changes b/Changes index 44f4ba1f8..a2436011d 100644 --- a/Changes +++ b/Changes @@ -1,6 +1,7 @@ LIST OF CHANGES FOR NPG-QC PACKAGE - modified spatial filter qc check to read all run_lane filter.stats files + - changed naming of spatial_filter stats files to _*.spatial_filter.stats - upstream_tags qc check - replaced bamindexdecoder with bambi decode - dropped ability for qc checks to sub-sample input fastq instead run the checks directly off the cached fastq files diff --git a/lib/npg_qc/autoqc/checks/spatial_filter.pm b/lib/npg_qc/autoqc/checks/spatial_filter.pm index a0f2525ab..1e8f8d2b7 100644 --- a/lib/npg_qc/autoqc/checks/spatial_filter.pm +++ b/lib/npg_qc/autoqc/checks/spatial_filter.pm @@ -10,7 +10,7 @@ our $VERSION = '0'; override 'execute' => sub { my ($self) = @_; - my $filter_stats_file_name_glob = $self->qc_in . q{/} . $self->id_run . '_' . $self->position . q{*.filter.stats}; + my $filter_stats_file_name_glob = $self->qc_in . q{/} . $self->id_run . '_' . $self->position . q{*.spatial_filter.stats}; my @filter_stats_files = glob $filter_stats_file_name_glob or croak "Cannot find any filter stats files using $filter_stats_file_name_glob"; $self->result->parse_output(\@filter_stats_files); #read stderr from spatial_filter -a for each sample