build.xml

<?xml version="1.0"?>

<!--

    This is the ant build file for the Mesquite.R Java package for 
    R<->Mesquite interaction.

-->

<project name="Mesquite.R" default="jar">

  <!--

      ############################################################
      Properties section
      ############################################################

    -->

  <!-- additional local properties for this build -->
  <property file="build.properties"/>

  <!-- project info -->
  <property name="project" value="Mesquite.R"/>
  <property name="version.number" value="0.0.3"/>

  <!-- distribution -->
  <property name="dist.name" value="${project}-${version.number}"/>

  <!-- directories -->
  <property name="dir.build" value="build"/>
  <property name="dir.build.classes" value="${dir.build}/classes"/>
  <property name="dir.src" value="Source"/>
  <property name="dir.lib" value="lib"/>
  <property name="dir.doc" value="docs"/>
  <property name="dir.apidoc" value="${dir.doc}/api"/>
  <property name="dir.test" value="test"/>

  <!-- files -->
  <property name="file.jar" value="${dir.build}/${dist.name}.jar"/>

  <!-- deployment -->
  <property name="dir.deploy" value="deploy"/>
  <property name="R.package" value="RMesquite"/>

  <!-- paths and sets of files -->
  <patternset id="file.list.RtoM">
    <include name="mesquite/R/lib/**/*"/>
  </patternset>
  <patternset id="file.list.MtoR">
    <include name="mesquite/R/lib/**/*"/>
  </patternset>

  <!-- classes: -->
  <fileset dir="${dir.build.classes}" id="classfiles.RtoM">
    <patternset refid="file.list.RtoM"/>
    <filename name="**/*.class"/>
  </fileset>
  <fileset dir="${dir.build.classes}" id="classfiles.MtoR">
    <patternset refid="file.list.MtoR"/>
    <filename name="**/*.class"/>
  </fileset>

  <!-- additional elements for classpath -->
  <path id="my.classpath">
    <pathelement path="${mesquite.home}"/>
  </path>

  <!--

      ############################################################
      Target section
      ############################################################

    -->

  <target name="init">
    <tstamp>
      <format property="TODAY.NOW" pattern="MMM d yyyy, hh:mm:ss"/>
    </tstamp>
    <echo message="Started build script for Mesquite.R ${TODAY.NOW}"/>
  </target>

  <!-- compile the source files -->
  <target name="compile" depends="init" description="Compile sources.">
    <mkdir dir="${dir.build}"/>
    <mkdir dir="${dir.build.classes}"/>
    <javac srcdir="${dir.src}"
	   destdir="${dir.build.classes}"
	   includeAntRuntime="false" debug="true" deprecation="true"
	   >
      <classpath><path refid="my.classpath"/></classpath>
      <patternset refid="file.list.RtoM"/>
      <filename name="**/*.java"/>
    </javac>
  </target>

  <!-- build jar file -->
  <target name="jar" depends="compile" description="Create jar file.">
    <!-- jar it up -->
    <jar jarfile="${file.jar}"
	 basedir="${dir.build.classes}" compress="true"
	 update="false">
      <exclude name="**/*"/>
      <fileset refid="classfiles.RtoM"/>
      <manifest>
        <attribute name="Built-By" value="${user.name}"/>
      </manifest>
    </jar>
  </target>

  <target name="rebuild" depends="clean,jar" description="Rebuild the jar.">
    <echo message="Rebuild done."/>
  </target>

  <target name="javadoc" depends="init" description="Generate Javadoc.">
    <mkdir dir="${dir.apidoc}"/>
    <javadoc destdir="${dir.apidoc}"
             windowtitle="${project} Javadoc Documentation"
             doctitle="${project} Javadoc Documentation"
             package="true" version="true" author="true">
      <classpath>
        <path refid="my.classpath"/>
        <fileset dir="${dir.build}"><patternset refid="lib.jars"/></fileset>
      </classpath>
      <fileset refid="srcfiles"/>
      <link href="http://java.sun.com/j2se/1.4.2/docs/api/"/>
    </javadoc>
  </target>

  <target name="clean" depends="init" description="Clean all build products.">
    <delete>
      <fileset dir="${dir.build.classes}"/>
    </delete>
    <delete file="${file.jar}"/>
  </target>

  <target name="deploy" depends="jar" 
          description="Deploy jar file to destination">
    <copy file="${file.jar}" todir="${deploy.dir}" 
          flatten="true" preservelastmodified="true" verbose="true"/>
  </target>

  <target name="Rinstall" depends="deploy" 
          description="Install the R package">
    <exec executable="R" dir="${deploy.dir}/../../..">
      <arg value="CMD"/>
      <arg value="INSTALL"/>
      <arg value="${R.package}"/>
    </exec>
  </target>

</project>