From 11f27e520822ea78e8212c3bfb85b727e4ac6c8e Mon Sep 17 00:00:00 2001 From: wlandau Date: Fri, 30 Aug 2024 13:27:58 -0400 Subject: [PATCH] r_arguments defaults --- R/crew_controller_lsf.R | 2 +- R/crew_controller_pbs.R | 2 +- R/crew_controller_sge.R | 2 +- R/crew_controller_slurm.R | 2 +- R/crew_launcher_cluster.R | 2 +- R/crew_launcher_lsf.R | 2 +- R/crew_launcher_pbs.R | 2 +- R/crew_launcher_sge.R | 2 +- R/crew_launcher_slurm.R | 2 +- man/crew_controller_lsf.Rd | 2 +- man/crew_controller_pbs.Rd | 2 +- man/crew_controller_sge.Rd | 2 +- man/crew_controller_slurm.Rd | 2 +- man/crew_launcher_cluster.Rd | 2 +- man/crew_launcher_lsf.Rd | 2 +- man/crew_launcher_pbs.Rd | 2 +- man/crew_launcher_sge.Rd | 2 +- man/crew_launcher_slurm.Rd | 2 +- 18 files changed, 18 insertions(+), 18 deletions(-) diff --git a/R/crew_controller_lsf.R b/R/crew_controller_lsf.R index 9606769..72aeeb3 100644 --- a/R/crew_controller_lsf.R +++ b/R/crew_controller_lsf.R @@ -46,7 +46,7 @@ crew_controller_lsf <- function( reset_options = FALSE, garbage_collection = FALSE, launch_max = 5L, - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("bsub")), command_terminate = as.character(Sys.which("bkill")), diff --git a/R/crew_controller_pbs.R b/R/crew_controller_pbs.R index 0f57939..6f895c3 100644 --- a/R/crew_controller_pbs.R +++ b/R/crew_controller_pbs.R @@ -42,7 +42,7 @@ crew_controller_pbs <- function( reset_options = FALSE, garbage_collection = FALSE, launch_max = 5L, - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("qsub")), command_terminate = as.character(Sys.which("qdel")), diff --git a/R/crew_controller_sge.R b/R/crew_controller_sge.R index 7f11950..89ed72a 100644 --- a/R/crew_controller_sge.R +++ b/R/crew_controller_sge.R @@ -42,7 +42,7 @@ crew_controller_sge <- function( reset_options = FALSE, garbage_collection = FALSE, launch_max = 5L, - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("qsub")), command_terminate = as.character(Sys.which("qdel")), diff --git a/R/crew_controller_slurm.R b/R/crew_controller_slurm.R index d831acd..45fcbb3 100644 --- a/R/crew_controller_slurm.R +++ b/R/crew_controller_slurm.R @@ -46,7 +46,7 @@ crew_controller_slurm <- function( reset_options = FALSE, garbage_collection = FALSE, launch_max = 5L, - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("sbatch")), command_terminate = as.character(Sys.which("scancel")), diff --git a/R/crew_launcher_cluster.R b/R/crew_launcher_cluster.R index a7331fb..75d0632 100644 --- a/R/crew_launcher_cluster.R +++ b/R/crew_launcher_cluster.R @@ -49,7 +49,7 @@ crew_launcher_cluster <- function( garbage_collection = FALSE, launch_max = 5L, tls = crew::crew_tls(mode = "automatic"), - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = "", command_terminate = "", diff --git a/R/crew_launcher_lsf.R b/R/crew_launcher_lsf.R index 35d1135..1718972 100644 --- a/R/crew_launcher_lsf.R +++ b/R/crew_launcher_lsf.R @@ -70,7 +70,7 @@ crew_launcher_lsf <- function( garbage_collection = FALSE, launch_max = 5L, tls = crew::crew_tls(mode = "automatic"), - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("bsub")), command_terminate = as.character(Sys.which("bkill")), diff --git a/R/crew_launcher_pbs.R b/R/crew_launcher_pbs.R index eacdb22..9fbbcc7 100644 --- a/R/crew_launcher_pbs.R +++ b/R/crew_launcher_pbs.R @@ -75,7 +75,7 @@ crew_launcher_pbs <- function( garbage_collection = FALSE, launch_max = 5L, tls = crew::crew_tls(mode = "automatic"), - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("qsub")), command_terminate = as.character(Sys.which("qdel")), diff --git a/R/crew_launcher_sge.R b/R/crew_launcher_sge.R index 06b50ee..c7cda09 100644 --- a/R/crew_launcher_sge.R +++ b/R/crew_launcher_sge.R @@ -77,7 +77,7 @@ crew_launcher_sge <- function( garbage_collection = FALSE, launch_max = 5L, tls = crew::crew_tls(mode = "automatic"), - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("qsub")), command_terminate = as.character(Sys.which("qdel")), diff --git a/R/crew_launcher_slurm.R b/R/crew_launcher_slurm.R index e8bbfef..f6ebad3 100644 --- a/R/crew_launcher_slurm.R +++ b/R/crew_launcher_slurm.R @@ -75,7 +75,7 @@ crew_launcher_slurm <- function( garbage_collection = FALSE, launch_max = 5L, tls = crew::crew_tls(mode = "automatic"), - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("sbatch")), command_terminate = as.character(Sys.which("scancel")), diff --git a/man/crew_controller_lsf.Rd b/man/crew_controller_lsf.Rd index 98c702b..2c4197a 100644 --- a/man/crew_controller_lsf.Rd +++ b/man/crew_controller_lsf.Rd @@ -28,7 +28,7 @@ crew_controller_lsf( reset_options = FALSE, garbage_collection = FALSE, launch_max = 5L, - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("bsub")), command_terminate = as.character(Sys.which("bkill")), diff --git a/man/crew_controller_pbs.Rd b/man/crew_controller_pbs.Rd index 3cb52f3..8b6ae85 100644 --- a/man/crew_controller_pbs.Rd +++ b/man/crew_controller_pbs.Rd @@ -28,7 +28,7 @@ crew_controller_pbs( reset_options = FALSE, garbage_collection = FALSE, launch_max = 5L, - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("qsub")), command_terminate = as.character(Sys.which("qdel")), diff --git a/man/crew_controller_sge.Rd b/man/crew_controller_sge.Rd index ba25716..65f1618 100644 --- a/man/crew_controller_sge.Rd +++ b/man/crew_controller_sge.Rd @@ -28,7 +28,7 @@ crew_controller_sge( reset_options = FALSE, garbage_collection = FALSE, launch_max = 5L, - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("qsub")), command_terminate = as.character(Sys.which("qdel")), diff --git a/man/crew_controller_slurm.Rd b/man/crew_controller_slurm.Rd index ff98fbc..9ca52e8 100644 --- a/man/crew_controller_slurm.Rd +++ b/man/crew_controller_slurm.Rd @@ -28,7 +28,7 @@ crew_controller_slurm( reset_options = FALSE, garbage_collection = FALSE, launch_max = 5L, - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("sbatch")), command_terminate = as.character(Sys.which("scancel")), diff --git a/man/crew_launcher_cluster.Rd b/man/crew_launcher_cluster.Rd index a655113..61ad37a 100644 --- a/man/crew_launcher_cluster.Rd +++ b/man/crew_launcher_cluster.Rd @@ -20,7 +20,7 @@ crew_launcher_cluster( garbage_collection = FALSE, launch_max = 5L, tls = crew::crew_tls(mode = "automatic"), - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = "", command_terminate = "", diff --git a/man/crew_launcher_lsf.Rd b/man/crew_launcher_lsf.Rd index 68510d3..27cb6f1 100644 --- a/man/crew_launcher_lsf.Rd +++ b/man/crew_launcher_lsf.Rd @@ -20,7 +20,7 @@ crew_launcher_lsf( garbage_collection = FALSE, launch_max = 5L, tls = crew::crew_tls(mode = "automatic"), - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("bsub")), command_terminate = as.character(Sys.which("bkill")), diff --git a/man/crew_launcher_pbs.Rd b/man/crew_launcher_pbs.Rd index b82df22..6e5841a 100644 --- a/man/crew_launcher_pbs.Rd +++ b/man/crew_launcher_pbs.Rd @@ -20,7 +20,7 @@ crew_launcher_pbs( garbage_collection = FALSE, launch_max = 5L, tls = crew::crew_tls(mode = "automatic"), - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("qsub")), command_terminate = as.character(Sys.which("qdel")), diff --git a/man/crew_launcher_sge.Rd b/man/crew_launcher_sge.Rd index 7a7e504..a48e734 100644 --- a/man/crew_launcher_sge.Rd +++ b/man/crew_launcher_sge.Rd @@ -20,7 +20,7 @@ crew_launcher_sge( garbage_collection = FALSE, launch_max = 5L, tls = crew::crew_tls(mode = "automatic"), - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("qsub")), command_terminate = as.character(Sys.which("qdel")), diff --git a/man/crew_launcher_slurm.Rd b/man/crew_launcher_slurm.Rd index 9391ad0..675935d 100644 --- a/man/crew_launcher_slurm.Rd +++ b/man/crew_launcher_slurm.Rd @@ -20,7 +20,7 @@ crew_launcher_slurm( garbage_collection = FALSE, launch_max = 5L, tls = crew::crew_tls(mode = "automatic"), - r_arguments = NULL, + r_arguments = c("--no-save", "--no-restore"), verbose = FALSE, command_submit = as.character(Sys.which("sbatch")), command_terminate = as.character(Sys.which("scancel")),