NAMESPACE

#Has few conflicts in methods.
# TODO : Use importFrom, will remove warnings.
# import(corrplot)
import(pls)
import(yacca)
import(FRCC)
import(STRINGdb)
import(RCurl)
import(BiocCheck)
import(httr)
import(XML)
import(RJSONIO)
import(plyr)
import(mygene)
import(gridExtra)
import(CCA)
import(utils)
importFrom("grDevices", "dev.off", "png")
importFrom("graphics", "par")
importFrom("stats", "biplot", "predict")
import(igraph)

# Export NEW PUBLIC API
export(clusterUsingOntology)
export(mergeChEBIOntologyWithChildFavoring)
export(mapReactomePathwaysUnderOrganism)
export(getStringNeighbours)
export(readGroupsAsDf)
export(makeCanonicalCorrelationAnalysis)
export(plotCanonicalCorrelationAnalysisResults)
export(makePartialLeastSquaresRegression)
export(plotRmsepForPLS)
export(plotRegression)
export(createFunctionalInteractionsDataFrame)
export(makePermutationTestOnCCA)
export(makeCCAOnGroups)
export(makePermutationTestOnPLS)
export(makePLSOnGroups)

# DEV Exports.
export(mapFromStringIdsToEnsembleIds)
export(getSymbolsBaseOnEnsemblPeptidIdsUsingMyGenePackage)
export(firstExistsInReactomeChebiOntology)

# Expoet functions
export(setUpReactomeMapping)
export(decorateByReactomeData)
export(decorateByStringDbData)

# Export CONST
export(taxonIdToReactomeCodes)
# Fill it in future.
exportClasses()
exportMethods()