v0.7

This release is used in the GROOT paper.

v0.6

addresses reviewer comments:

• reports absent required flags to screen instead of log
• adds an egg
• adds a note on unit tests
• adds a windows binary

v0.5

• updates the groot-core-db
• fixes an issue for some OSX users where ulimit is set too low for the number of simultaneous MSA file handles
• fixes an issue with the logFile global flag

v0.4

• adds GFA support
• new databases (groot + groot-core)
• fixes some BAM format errors
• removes window offset option
• allows customised log files
• general improvements

v0.3

• retains reads that overlap start/end of a gene
• adds --lowCov option to groot report subcommand
• general readability improvements

v0.2

• adds the groot get subcommand to download pre-clustered ARG databases
• adds coverage plots to the groot report subcommand

v0.1

Initial release of groot.