.travis.yml

language: python
python:
  - "3.5"
  - "3.6"
  - "3.7"

# We want to test against two versions of Primer3
env:
  - PRIMER3_VERSION=1.1.4
  - PRIMER3_VERSION=2.3.7

# command to install dependencies
install:
  - sudo apt-get update
  - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
  - bash miniconda.sh -b -p $HOME/miniconda
  - export PATH="$HOME/miniconda/bin:$PATH"
  - hash -r
  - conda config --set always_yes yes --set changeps1 no
  - conda update -q conda
  - conda config --add channels defaults
  - conda config --add channels bioconda
  - conda config --add channels conda-forge
  - conda info -a
  - conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION
  - source activate test-environment
  - conda install prodigal blast bedtools mafft mummer=3.23 emboss primer3=$PRIMER3_VERSION
  - conda install --yes --file requirements.txt
  - conda install --yes --file requirements-dev.txt
  - pip install -r requirements-pip.txt
  - pip install -e .

# command to run tests
script:
  - pytest -s -v --cov=./

dist: xenial
sudo: false

# Use codecov for code coverage
after_success:
  - codecov

# Send Travis-CI updates to Slack
notifications:
  slack:
    secure: 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