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Change Log

0.15.1 (2019-06-24)

Features

  • Updated ProteoWizard to latest version.

Bug fixes

  • Updated regex matcher for protein accession / description.

0.15.0 (2019-01-28)

Features

  • Added filtering by minimum ion score.

0.14.0 (2019-01-28)

Bug fixes

  • Fixed calculating b ion mass for unlabeled peptides.

0.13.9 (2019-01-28)

Bug fixes

  • Show output of msconvert.exe on error.

0.13.8 (2019-01-25)

Bug fixes

  • Don't error on unlabeled runs.

0.13.7 (2019-01-22)

Bug fixes

  • Fixed bug in phosphoRS module.

0.13.6 (2019-01-18)

Bug fixes

  • Fixed very slow scan processing on PD2.2 search files.

0.13.5 (2019-01-17)

Bug fixes

  • Fixed phosphoRS PD2.2 bug.

0.13.4 (2019-01-17)

Bug fixes

  • Fixed phosphoRS for PD1.4, PD2.2.

0.13.3 (2019-01-17)

Bug fixes

  • Fixed os.path.dirname error on startup.

0.13.2 (2019-01-10)

Bug fixes

  • Set pycamv.log path to same folder as .msf file.

0.13.1 (2019-01-04)

Bug fixes

  • Fixed errors in building PyCAMVerter.exe.

0.13.0 (2019-01-03)

Features

  • Added support for ProteomeDiscoverer 2.2.

0.12.0 (2018-04-30)

Features

  • Added support for phosphoRS phosphorylation assignments.

0.11.2 (2018-04-04)

Bug fixes

  • Fixed win32api error in deployments.

0.11.1 (2018-02-07)

Bug fixes

  • Fix crash on dynamic N/C-term modifications.
  • Fix crash on empty workflow elements.

0.11.0 (2017-11-10)

Features

  • Add protein sequence, uniprot accessions, peptide offsets to output.

0.10.0 (2017-09-07)

Features

  • Add fragment intensity info to database, allowing quick export of quantitation data.

0.9.0 (2017-08-30)

Bug fixes

  • Fixed bug in calculating the mass of parent ion fragments with C13 additions.
  • Only estimate max C13 number using ions within precursor isolation window.

0.8.3 (2017-07-19)

Features

  • Use low priority threads during processing to avoid impacting other tasks.

0.8.2 (2017-06-08)

Bug fixes

  • Fixed crash when X amino acids included modifications other than "Mapping*".

0.8.1 (2017-05-25)

Bug fixes

  • Fixed crash when no peaks are detected in the precursor window.

0.8.0 (2017-05-24)

Features

  • Determine C13 fragments based on the number of C13 peaks seen within the isolation window.

0.7.0 (2017-05-17)

Features

  • Added support for TMT11plex

0.6.1 (2017-05-15)

Bug fixes

  • Fixed some cases where intermediate processing files were not deleted when a processing run was interrupted or errored.
  • Fixed several type errors.

0.6.0 (2017-05-12)

Features

  • Added the ability to limit CPU processes via command line arguments.

Bug fixes

  • Allow for mapping of "X" in a peptide sequence to any amino acid (not just S/N).
  • Fixed bug in determining precursor peptide charge in rare cases.
  • Fixed crash when multiple proteins exist with the same description.

0.5.0 (2017-05-04)

Bug fixes

  • Allow for alternative scans for quant scan

0.4.0 (2017-05-02)

Features

  • Added the ability to import validation data from CAMV-Matlab sessions.

0.3.3 (2017-04-11)

Features

  • Improved performance of scan lookups with SQL indices.

Bug fixes

  • Fixed crash on MASCOT xml search data.

0.3.2 (2017-04-06)

Features

  • Added auto-maybe for peptides with best ranking by MASCOT.

0.3.1 (2017-04-05)

Features

  • Added functionality to reprocess individual scans without PTM combination limits.

Bug fixes

  • Fixed main process hanging when a subprocess encountered an error.

0.3.0 (2017-03-24)

Features

  • Added support for ProteomeDiscoverer 2.1.
  • Several optimizations to get working on pS/T data sets.
  • Added pypy support.
  • Added support for runs with multiple raw files.
  • Limit generated sequences to 10 combinations per peptide to reduce pS/T file sizes.
  • Reduced memory usage by using python generators.
  • Use SQLite to store exported data. +This change is not backwards compatible with version of CAMV / pycamverter < 0.3.0+.

Bug fixes

  • Cleanup temp data files after runs.
  • Fixed py2.7 errors.

0.2.0 (2017-03-17)

Features

  • Added support for using ProteomeDiscoverer search files, alongside MASCOT.
  • Started annotating export files with generator's pycamverter version.
  • Support csv scan lists.

Bug fixes

  • Fixed issue with peptideData being blank when ambiguous peptides were present.
  • Fixed issues with viewing peptides with similar types of modifications
  • Merge proteins from ambiguous peptide matches

0.1.2 (2017-03-10)

Features

  • Upped ProteoWizard version to 3.0.10577
  • Added C13 isotope labeling
  • Improved speed of spectra matching

0.1.1 (2017-03-07)

Features

  • Use python multiprocessing to cut data processing time in half.

0.1.0 (2017-03-06)

Features

  • Initial release, spun off from pyproteome.