complexity.bib

% Encoding: UTF-8

@Article{2013EJPh...34..303B,
  author        = {{Benguigui}, L.},
  title         = {{The different paths to entropy}},
  journal       = {European Journal of Physics},
  year          = {2013},
  volume        = {34},
  number        = {2},
  pages         = {303},
  month         = {Mar},
  abstract      = {In order to understand how the complex concept of entropy emerged, we propose a trip into the past, reviewing the works of Clausius, Boltzmann, Gibbs and Planck. In particular, since Gibbs's work is not very well known we present a detailed analysis, recalling the three definitions of entropy that Gibbs gives. The introduction of entropy in quantum mechanics gives in a compact form all the classical definitions of entropy. Perhaps one of the most important aspects of entropy is to see it as a thermodynamic potential like the others proposed by Callen. The calculation of fluctuations in thermodynamic quantities is thus naturally related to entropy. We close with some remarks on entropy and irreversibility. },
  adsnote       = {Provided by the SAO/NASA Astrophysics Data System},
  adsurl        = {https://ui.adsabs.harvard.edu/abs/2013EJPh...34..303B},
  archiveprefix = {arXiv},
  doi           = {10.1088/0143-0807/34/2/303},
  eprint        = {1209.2268},
  keywords      = {Physics - History and Philosophy of Physics},
  primaryclass  = {physics.hist-ph},
}
@book{Abelson:1985:SIC:26777,
 author = {Abelson, Harold and Sussman, Gerald Jay and Sussman, Julie},
 title = {Structure and Interpretation of Computer Programs},
 year = {1985},
 isbn = {0-262-01077-1},
 publisher = {MIT Press},
 address = {Cambridge, MA, USA},
} 

@Misc{allaire2018rmarkdown,
  author       = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang},
  title        = {rmarkdown: Dynamic Documents for R},
  howpublished = {\url{https://CRAN.R-project.org/package=rmarkdown}},
  year         = {2018},
  note         = {R package version 1.9},
  groups       = {R+Stats+RMarkdown},
}

@Article{alroy2008dynamics,
  author    = {Alroy, John},
  title     = {Dynamics of origination and extinction in the marine fossil record},
  journal   = {Proceedings of the National Academy of Sciences},
  year      = {2008},
  groups    = {Ecology},
  publisher = {National Acad Sciences},
  url       = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2556405/},
}

@Article{aoki2014domain,
  author    = {Aoki, Ken-Ichi and Fujii, Yasuhiro and Kobayashi, Tamao},
  title     = {Domain Wall Renormalization Group Approach to the 2d Ising Model with External Magnetic Field (Applications of Renormalization Group Methods in Mathematical Sciences)},
  journal   = {RIMS Kôkyûroku},
  year      = {2014},
  number    = {1904},
  pages     = {13--30},
  publisher = {RIMS},
}

@Article{arens2008press,
  author    = {Arens, Nan Crystal and West, Ian D},
  title     = {Press-pulse: a general theory of mass extinction?},
  journal   = {Paleobiology},
  year      = {2008},
  volume    = {34},
  number    = {4},
  pages     = {456--471},
  groups    = {Ecology},
  publisher = {Cambridge University Press},
}

@TechReport{arthur1992learning,
  author       = {Arthur, W Brian and others},
  title        = {On learning and adaptation in the economy},
  year         = {1992},
  note         = {[Online; accessed 2-Feb-2020]},
  howpublished = {\url{https://sfi-edu.s3.amazonaws.com/sfi-edu/production/uploads/sfi-com/dev/uploads/filer/dc/d8/dcd8e01a-3a21-4d1f-8106-9cc8caa5a975/92-07-038.pdf}},
}

@Article{arthur1994inductive,
  author    = {Arthur, W Brian},
  title     = {Inductive reasoning and bounded rationality},
  journal   = {The American economic review},
  year      = {1994},
  volume    = {84},
  number    = {2},
  pages     = {406--411},
  groups    = {El Farol, Minority Games, El Farol+ Minority Games+Markets},
  publisher = {JSTOR},
}

@Misc{ashton2012renormalization,
  author       = {Ashton, Douglas},
  title        = {The Renormalisation Group},
  howpublished = {\url{https://www.youtube.com/watch?v=MxRddFrEnPc}},
  month        = apr,
  year         = {2012},
}

@Article{bell2003coordination,
  author    = {Bell, Ann M and Sethares, William A and Bucklew, James A},
  title     = {Coordination failure as a source of congestion in information networks},
  journal   = {IEEE Transactions on Signal Processing},
  year      = {2003},
  volume    = {51},
  number    = {3},
  pages     = {875--885},
  groups    = {El Farol, Minority Games, El Farol+ Minority Games+Markets},
  publisher = {IEEE},
}

@Article{bruss2000sum,
  author    = {BRUSS, F Thomas},
  title     = {Sum the odds to one and stop},
  journal   = {Annals of probability},
  year      = {2000},
  volume    = {28},
  number    = {3},
  pages     = {1384--1391},
  groups    = {R+Stats+RMarkdown},
  publisher = {Institute of Mathematical Statistics},
}

@InCollection{chakrabarti2007kolkata,
  author    = {Chakrabarti, Bikas K},
  title     = {Kolkata restaurant problem as a generalised el farol bar problem},
  booktitle = {Econophysics of Markets and Business Networks},
  publisher = {Springer},
  year      = {2007},
  pages     = {239--246},
  groups    = {El Farol, Minority Games, El Farol+ Minority Games+Markets},
}

@Article{chakrabarti2009kolkata,
  author    = {Chakrabarti, Anindya Sundar and Chakrabarti, Bikas K and Chatterjee, Arnab and Mitra, Manipushpak},
  title     = {The Kolkata Paise Restaurant problem and resource utilization},
  journal   = {Physica A: Statistical Mechanics and its Applications},
  year      = {2009},
  volume    = {388},
  number    = {12},
  pages     = {2420--2426},
  groups    = {El Farol, Minority Games, El Farol+ Minority Games+Markets},
  publisher = {Elsevier},
}

@Misc{Challenge:2018,
  author       = {Santa Fe Institute},
  title        = {Spring 2018 Complexity Challenge},
  howpublished = {\url{https://www.complexityexplorer.org/challenges/2-spring-2018-complexity-challenge/submissions}},
  year         = {2018},
  note         = {[Online; accessed 30-April-2018]},
  groups       = {El Farol, Minority Games, El Farol+ Minority Games+Markets},
}

@Article{challet1997emergence,
  author    = {Challet, Damien and Zhang, Y-C},
  title     = {Emergence of cooperation and organization in an evolutionary game},
  journal   = {Physica A: Statistical Mechanics and its Applications},
  year      = {1997},
  volume    = {246},
  number    = {3-4},
  pages     = {407--418},
  groups    = {El Farol+ Minority Games+Markets},
  publisher = {Elsevier},
}

@Article{challet1998minority,
  author    = {Challet, Damien and Zhang, Yi-Cheng},
  title     = {On the minority game: Analytical and numerical studies},
  journal   = {Physica A: Statistical Mechanics and its applications},
  year      = {1998},
  volume    = {256},
  number    = {3-4},
  pages     = {514--532},
  groups    = {El Farol+ Minority Games+Markets},
  publisher = {Elsevier},
}

@Article{challet2004shedding,
  author    = {Challet, Damien and Marsili, Matteo and Ottino, Gabriele},
  title     = {Shedding light on el farol},
  journal   = {Physica A: Statistical Mechanics and Its Applications},
  year      = {2004},
  volume    = {332},
  pages     = {469--482},
  publisher = {Elsevier},
}

@Article{challet2013minority,
  author    = {Challet, Damien and Marsili, Matteo and Zhang, Yi-Cheng and others},
  title     = {Minority games: interacting agents in financial markets},
  journal   = {OUP Catalogue},
  year      = {2013},
  groups    = {El Farol+ Minority Games+Markets},
  publisher = {Oxford University Press},
}

@Article{cleland:2011,
  author  = {E E Cleland},
  title   = {Biodiversity and Ecosystem Stability},
  journal = {Nature Education Knowledge},
  year    = {2011},
  volume  = {3},
  number  = {10},
  pages   = {14-20},
  groups  = {Ecology},
}

@book{Dawkins83, 
	author = {Dawkins, Richard},
	title = {The extended phenotype: {T}he gene as a unit of selection},
	publisher = {Oxford University Press}, 
	address = {Oxford},
	year = 1983, 
	annote = {Extension of the ideas presented in ``The Selfish Gene''.}
}

@Article{dedeo2011effective,
  author    = {DeDeo, Simon},
  title     = {Effective theories for circuits and automata},
  journal   = {Chaos: An Interdisciplinary Journal of Nonlinear Science},
  year      = {2011},
  volume    = {21},
  number    = {3},
  pages     = {037106},
  publisher = {AIP},
}

@Article{dedeo2012dynamics,
  author    = {DeDeo, Simon and Krakauer, David C},
  title     = {Dynamics and processing in finite self-similar networks},
  journal   = {Journal of the Royal Society Interface},
  year      = {2012},
  volume    = {9},
  number    = {74},
  pages     = {2131--2144},
  publisher = {The Royal Society},
}

@Article{dedeo2013bootstrap,
  author    = {DeDeo, Simon and Hawkins, Robert and Klingenstein, Sara and Hitchcock, Tim},
  title     = {Bootstrap methods for the empirical study of decision-making and information flows in social systems},
  journal   = {Entropy},
  year      = {2013},
  volume    = {15},
  number    = {6},
  pages     = {2246--2276},
  abstract  = {We characterize the statistical bootstrap for the estimation of information-
theoretic quantities from data, with particular reference to its use in the study of large-scale
social phenomena. Our methods allow one to preserve, approximately, the underlying
axiomatic relationships of information theory—in particular, consistency under arbitrary
coarse-graining—that motivate use of these quantities in the first place, while providing
reliability comparable to the state of the art for Bayesian estimators. We show how
information-theoretic quantities allow for rigorous empirical study of the decision-making
capacities of rational agents, and the time-asymmetric flows of information in distributed
systems. We provide illustrative examples by reference to ongoing collaborative work on
the semantic structure of the British Criminal Court system and the conflict dynamics of the
contemporary Afghanistan insurgency.},
  publisher = {Multidisciplinary Digital Publishing Institute},
  url       = {We characterize the statistical bootstrap for the estimation of information-
theoretic quantities from data, with particular reference to its use in the study of large-scale
social phenomena. Our methods allow one to preserve, approximately, the underlying
axiomatic relationships of information theory—in particular, consistency under arbitrary
coarse-graining—that motivate use of these quantities in the first place, while providing
reliability comparable to the state of the art for Bayesian estimators. We show how
information-theoretic quantities allow for rigorous empirical study of the decision-making
capacities of rational agents, and the time-asymmetric flows of information in distributed
systems. We provide illustrative examples by reference to ongoing collaborative work on
the semantic structure of the British Criminal Court system and the conflict dynamics of the
contemporary Afghanistan insurgency.},
}

@Article{dedeo2016conflict,
  author    = {DeDeo, Simon},
  title     = {Conflict and computation on wikipedia: A finite-state machine analysis of editor interactions},
  journal   = {Future Internet},
  year      = {2016},
  volume    = {8},
  number    = {3},
  pages     = {31},
  publisher = {Multidisciplinary Digital Publishing Institute},
}

@Article{dedeo201716,
  author    = {DeDeo, Simon},
  title     = {16 Major Transitions in Political Order},
  journal   = {From Matter to Life: Information and Causality},
  year      = {2017},
  pages     = {393},
  publisher = {Cambridge University Press},
}

@Misc{dedeo2017renormalization,
  author       = {DeDeo, Simon},
  title        = {Introduction to Renormalization},
  howpublished = {\url{https://www.complexityexplorer.org/courses/67-introduction-to-renormalization}},
  year         = {2017},
}

@Misc{dedeo2018information,
  author       = {Simon DeDeo},
  title        = {Information Theory for Intelligent People},
  howpublished = {\url{http://tuvalu.santafe.edu/~simon/it.pdf}},
  month        = sep,
  year         = {2018},
}

@InCollection{dedeo2018origin,
  author    = {DeDeo, Simon},
  title     = {Origin Gaps and the Eternal Sunshine of the Second-Order Pendulum},
  booktitle = {Wandering Towards a Goal},
  publisher = {Springer},
  year      = {2018},
  pages     = {41--61},
}

@Article{fogel1999inductive,
  author       = {Fogel, David B and Chellapilla, Kumar and Angeline, Peter J},
  title        = {Inductive reasoning and bounded rationality reconsidered},
  journal      = {IEEE transactions on evolutionary computation},
  year         = {1999},
  volume       = {3},
  number       = {2},
  pages        = {142--146},
  note         = {[Online; accessed 15-Feb-2020]},
  groups       = {El Farol+ Minority Games+Markets},
  howpublished = {\url{https://s3.amazonaws.com/academia.edu.documents/48636129/4235.77116720160907-26935-17mno1g.pdf?response-content-disposition=inline%3B%20filename%3DInductive_reasoning_and_bounded_rational.pdf&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWOWYYGZ2Y53UL3A%2F20200214%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20200214T211149Z&X-Amz-Expires=3600&X-Amz-SignedHeaders=host&X-Amz-Signature=9e873ff155ab538db1cad5526811e720822d99b454e0dadb822914c004f99b1c}},
  publisher    = {IEEE},
}

@Article{frigg2011entropy,
  author    = {Frigg, Roman and Werndl, Charlotte},
  title     = {Entropy - A Guide for the Perplexed},
  year      = {2011},
  pages     = {115--142},
  booktitle = {Probabilities in Physics},
  editor    = {Claus Beisbart and Stephan Hartmann},
  publisher = {Oxford University Press},
}

@Article{garofalo2006modeling,
  author  = {Garofalo, Mark},
  title   = {Modeling the’El Farol Bar Problem’In NetLogo},
  journal = {PRELIMINARY DRAFT, Dexia Bank Belgium},
  year    = {2006},
  groups  = {El Farol+ Minority Games+Markets},
}

@Misc{Github:2018,
  author       = {Crase, Simon A.},
  title        = {Complexity Explorer Challenge 2018 April},
  howpublished = {https://github.com/weka511/201804},
  month        = apr,
  year         = {2018},
  groups       = {El Farol+ Minority Games+Markets},
}

@Article{hill2009knowing,
  author    = {Hill, Theodore P},
  title     = {Knowing When to Stop},
  journal   = {American scientist},
  year      = {2009},
  volume    = {97},
  number    = {2},
  pages     = {126--133},
  groups    = {El Farol+ Minority Games+Markets},
  publisher = {Sigma Xi},
}

@Article{holland2016ecological,
  author    = {Holland, Steven M},
  title     = {Ecological disruption precedes mass extinction},
  journal   = {Proceedings of the National Academy of Sciences},
  year      = {2016},
  volume    = {113},
  number    = {30},
  pages     = {8349--8351},
  groups    = {Ecology},
  publisher = {National Acad Sciences},
  url       = {https://www.pnas.org/content/113/30/8349.short},
}

@Article{israeli2004computational,
  author    = {Israeli, Navot and Goldenfeld, Nigel},
  title     = {Computational irreducibility and the predictability of complex physical systems},
  journal   = {Physical review letters},
  year      = {2004},
  volume    = {92},
  number    = {7},
  pages     = {074105},
  abstract  = {Using elementary cellular automata (CA) as an example, we show how to coarse-grain CA in all 
classes of Wolfram’s classification. We find that computationally irreducible (CIR) physical processes
can be predictable and even computationally reducible at a coarse-grained level of description. The
resulting coarse-grained CA which we construct emulate the large-scale behavior of the original
systems without accounting for small-scale details. At least one of the CA that can be coarse-
grained is irreducible and known to be a universal Turing machine.},
  publisher = {APS},
}

@Article{israeli2006coarse,
  author    = {Israeli, Navot and Goldenfeld, Nigel},
  title     = {Coarse-graining of cellular automata, emergence, and the predictability of complex systems},
  journal   = {Physical Review E},
  year      = {2006},
  volume    = {73},
  number    = {2},
  pages     = {026203},
  abstract  = {We study the predictability of emergent phenomena in complex systems. Using nearest neighbor,
one-dimensional Cellular Automata (CA) as an example, we show how to construct local coarse-
grained descriptions of CA in all classes of Wolfram’s classification. The resulting coarse-grained CA
that we construct are capable of emulating the large-scale behavior of the original systems without
accounting for small-scale details. Several CA that can be coarse-grained by this construction are
known to be universal Turing machines; they can emulate any CA or other computing devices and
are therefore undecidable. We thus show that because in practice one only seeks coarse-grained
information, complex physical systems can be predictable and even decidable at some level of de-
scription. The renormalization group flows that we construct induce a hierarchy of CA rules. This
hierarchy agrees well with apparent rule complexity and is therefore a good candidate for a com-
plexity measure and a classification method. Finally we argue that the large scale dynamics of
CA can be very simple, at least when measured by the Kolmogorov complexity of the large scale
update rule, and moreover exhibits a novel scaling law. We show that because of this large-scale
simplicity, the probability of finding a coarse-grained description of CA approaches unity as one
goes to increasingly coarser scales. We interpret this large scale simplicity as a pattern formation
mechanism in which large scale patterns are forced upon the system by the simplicity of the rules
that govern the large scale dynamics.},
  publisher = {APS},
}

@Article{jaynes1957information,
  author    = {Jaynes, Edwin T},
  title     = {Information theory and statistical mechanics},
  journal   = {Physical review},
  year      = {1957},
  volume    = {106},
  number    = {4},
  pages     = {620},
  publisher = {APS},
}

@Book{kadanoff2000statistical,
  title     = {Statistical physics: statics, dynamics and renormalization},
  publisher = {World Scientific Publishing Company},
  year      = {2000},
  author    = {Kadanoff, Leo P},
}

@Article{krakauer2011darwinian,
  author    = {Krakauer, David C},
  title     = {Darwinian demons, evolutionary complexity, and information maximization},
  journal   = {Chaos: An Interdisciplinary Journal of Nonlinear Science},
  year      = {2011},
  volume    = {21},
  number    = {3},
  pages     = {037110},
  publisher = {AIP},
}

@Book{lang02,
  title     = {Algebra},
  publisher = {Springer},
  year      = {2002},
  author    = {Lang, Serge},
  address   = {New York, NY},
  isbn      = {9781461300410 146130041X},
  abstract  = {This book is intended as a basic text for a one-year course in Algebra at the graduate level, or as a useful reference for mathematicians and professionals who use higher-level algebra. It successfully addresses the basic concepts of algebra. For the revised third edition, the author has added exercises and made numerous corrections to the text. Comments on Serge Lang's Algebra: Lang's Algebra changed the way graduate algebra is taught, retaining classical topics but introducing language and ways of thinking from category theory and homological algebra. It has affected all subsequent graduate-level algebra books. April 1999 Notices of the AMS, announcing that the author was awarded the Leroy P. Steele Prize for Mathematical Exposition for his many mathematics books. The author has an impressive knack for presenting the important and interesting ideas of algebra in just the "right" way, and he never gets bogged down in the dry formalism which pervades some parts of algebra. MathSciNet's review of the first edition.},
  added-at  = {2015-09-12T14:13:44.000+0200},
  biburl    = {https://www.bibsonomy.org/bibtex/2a29d0a9dddd526d758757cd99a8609fc/ytyoun},
  interhash = {2575569df400d3a9e85814b5e2397c11},
  intrahash = {a29d0a9dddd526d758757cd99a8609fc},
  keywords  = {textbook},
  refid     = {852792828},
  timestamp = {2015-09-12T14:14:10.000+0200},
}

@Article{malerkrohn,
  author    = {Maler, Oded},
  title     = {On the Krohn-Rhodes Cascaded Decomposition Theorem},
  publisher = {Citeseer},
}

@Article{nature:may:1971,
  author  = {Robert May},
  title   = {Stability in Multispecies Community Models},
  journal = {Mathematical Biosciences},
  year    = {1971},
  volume  = {12},
  pages   = {59-79},
  groups  = {Ecology},
}

@Article{nature:may:1972,
  author   = {Robert May},
  title    = {Will a Large Complex System be Stable?},
  journal  = {Nature},
  year     = {1972},
  volume   = {238},
  pages    = {413-414},
  abstract = {Gardner and Ashby1 have suggested that large complex systems which are assembled (connected) at random may be expected to be stable up to a certain critical level of connectance, and then, as this increases, to suddenly become unstable. Their conclusions were based on the trend of computer studies of systems with 4, 7 and 10 variables.},
  groups   = {Ecology},
  url      = {https://doi.org/10.1038/238413a0},
}

@Misc{nottelmann2000ising,
  author       = {Nottelmann, Bernd},
  title        = {Ising Model Simulation},
  howpublished = {\url{http://physics.ucsc.edu/~peter/java/ising/keep/ising.html}},
}

@Article{press2012iterated,
  author    = {Press, William H and Dyson, Freeman J},
  title     = {Iterated Prisoner’s Dilemma contains strategies that dominate any evolutionary opponent},
  journal   = {Proceedings of the National Academy of Sciences},
  year      = {2012},
  volume    = {109},
  number    = {26},
  pages     = {10409--10413},
  groups    = {El Farol, Minority Games, El Farol+ Minority Games+Markets},
  publisher = {National Acad Sciences},
}

@Article{rand2007farol,
  author  = {Rand, William and Stonedahl, Forrest},
  title   = {The El Farol Bar Problem and Computational Effort: Why People Fail to Use Bars Efficiently},
  journal = {Northwestern University, Evanston, IL},
  year    = {2007},
  groups  = {El Farol, Minority Games, El Farol+ Minority Games+Markets},
}

@Misc{rcore2018r,
  author       = {R Core Team,},
  title        = {R: A Language and Environment for Statistical Computing},
  howpublished = {\url{https://www.R-project.org/}},
  year         = {2018},
  address      = {Vienna, Austria},
  groups       = {R+Stats+RMarkdown},
  organization = {R Foundation for Statistical Computing},
}

@Book{rhodes2009applications,
  title     = {Applications of automata theory and algebra},
  publisher = {World Scientific},
  year      = {2009},
  author    = {Rhodes, John and Nehaniv, Chrystopher L},
}

@Book{romero2014hedge,
  title     = {What Hedge Funds Really Do: An Introduction to Portfolio Management},
  publisher = {Business Expert Press},
  year      = {2014},
  author    = {Romero, Philip J and Balch, Tucker},
  groups    = {El Farol+ Minority Games+Markets},
}

@Article{sasidevan2014strategy,
  author    = {Sasidevan, V and Dhar, Deepak},
  title     = {Strategy switches and co-action equilibria in a minority game},
  journal   = {Physica A: Statistical Mechanics and its Applications},
  year      = {2014},
  volume    = {402},
  pages     = {306--317},
  groups    = {El Farol, Minority Games, El Farol+ Minority Games+Markets},
  publisher = {Elsevier},
}

@InCollection{sep-ergodic-hierarchy,
	author       =	{Frigg, Roman and Berkovitz, Joseph and Kronz, Fred},
	title        =	{The Ergodic Hierarchy},
	booktitle    =	{The Stanford Encyclopedia of Philosophy},
	editor       =	{Edward N. Zalta},
	howpublished =	{\url{https://plato.stanford.edu/archives/sum2016/entries/ergodic-hierarchy/}},
	year         =	{2016},
	edition      =	{Summer 2016},
	publisher    =	{Metaphysics Research Lab, Stanford University}
}

@Article{Sheets201602102,
  author       = {Sheets, H. David and Mitchell, Charles E. and Melchin, Michael J. and Loxton, Jason and {\v S}torch, Petr and Carlucci, Kristi L. and Hawkins, Andrew D.},
  title        = {Graptolite community responses to global climate change and the Late Ordovician mass extinction},
  journal      = {Proceedings of the National Academy of Sciences},
  year         = {2016},
  issn         = {0027-8424},
  abstract     = {Climate change during Late Ordovician mass extinction drove an ecologically selective decline in the abundance of deep-water macrozooplankton, accompanied by a shift to simpler, less even communities. These results indicate that the species abundance structure of planktic communities may be a leading indicator of the effects of climate change on biodiversity and a more sensitive gauge of those effects than taxonomic diversity change alone. Additionally, we present a Bayesian likelihood method of habitat inference that may be applicable to other similar cases.Mass extinctions disrupt ecological communities. Although climate changes produce stress in ecological communities, few paleobiological studies have systematically addressed the impact of global climate changes on the fine details of community structure with a view to understanding how changes in community structure presage, or even cause, biodiversity decline during mass extinctions. Based on a novel Bayesian approach to biotope assessment, we present a study of changes in species abundance distribution patterns of macroplanktonic graptolite faunas (\~{}447{\textendash}444 Ma) leading into the Late Ordovician mass extinction. Communities at two contrasting sites exhibit significant decreases in complexity and evenness as a consequence of the preferential decline in abundance of dysaerobic zone specialist species. The observed changes in community complexity and evenness commenced well before the dramatic population depletions that mark the tipping point of the extinction event. Initially, community changes tracked changes in the oceanic water masses, but these relations broke down during the onset of mass extinction. Environmental isotope and biomarker data suggest that sea surface temperature and nutrient cycling in the paleotropical oceans changed sharply during the latest Katian time, with consequent changes in the extent of the oxygen minimum zone and phytoplankton community composition. Although many impacted species persisted in ephemeral populations, increased extinction risk selectively depleted the diversity of paleotropical graptolite species during the latest Katian and early Hirnantian. The effects of long-term climate change on habitats can thus degrade populations in ways that cascade through communities, with effects that culminate in mass extinction.},
  doi          = {10.1073/pnas.1602102113},
  elocation-id = {201602102},
  eprint       = {https://www.pnas.org/content/early/2016/07/13/1602102113.full.pdf},
  groups       = {Ecology},
  publisher    = {National Academy of Sciences},
  url          = {https://www.pnas.org/content/early/2016/07/13/1602102113},
}

@Article{simon1990mechanism,
  author    = {Simon, HA},
  title     = {A mechanism for social selection and successful altruism.},
  journal   = {Science},
  year      = {1990},
  volume    = {250},
  number    = {4988},
  pages     = {1665--1668},
  groups    = {El Farol+ Minority Games+Markets},
  publisher = {American Association for the Advancement of Science},
}

@Article{simon1991bounded,
  author    = {Simon, Herbert A},
  title     = {Bounded rationality and organizational learning},
  journal   = {Organization science},
  year      = {1991},
  volume    = {2},
  number    = {1},
  pages     = {125--134},
  groups    = {El Farol+ Minority Games+Markets},
  publisher = {INFORMS},
}

@Article{szabo2007evolutionary,
  author    = {Szab{\'o}, Gy{\"o}rgy and Fath, Gabor},
  title     = {Evolutionary games on graphs},
  journal   = {Physics reports},
  year      = {2007},
  volume    = {446},
  number    = {4-6},
  pages     = {97--216},
  groups    = {El Farol+ Minority Games+Markets},
  publisher = {Elsevier},
}

@Article{valiente2015beyond,
  author    = {Valiente-Banuet, Alfonso and Aizen, Marcelo A and Alc{\'a}ntara, Julio M and Arroyo, Juan and Cocucci, Andrea and Galetti, Mauro and Garc{\'\i}a, Mar{\'\i}a B and Garc{\'\i}a, Daniel and G{\'o}mez, Jos{\'e} M and Jordano, Pedro and others},
  title     = {Beyond species loss: the extinction of ecological interactions in a changing world},
  journal   = {Functional Ecology},
  year      = {2015},
  volume    = {29},
  number    = {3},
  pages     = {299--307},
  groups    = {Ecology},
  publisher = {Wiley Online Library},
}

@Misc{vanhespen2016thesis,
  author       = {van Hespen,Rosanna},
  title        = {Writing your thesis with R Markdown (2) – Text, citations and equations},
  howpublished = {\url{https://rosannavanhespenresearch.wordpress.com/2016/02/17/writing-your-thesis-with-rmarkdown-2-making-a-chapter/}},
  year         = {2016},
  note         = {[Online; accessed 13-May-2018]},
  groups       = {R+Stats+RMarkdown},
}

 @misc{ wiki:closure,
    author = "{Wikipedia contributors}",
    title = "Closure (computer programming) --- {Wikipedia}{,} The Free Encyclopedia",
    year = "2018",
    howpublished = "\urlhttps://en.wikipedia.org/w/index.php?title=Closure_(computer_programming)&oldid=840549395",
    note = "[Online; accessed 26-May-2018]"
  }

@Misc{wiki:emh,
  author       = {{Wikipedia contributors}},
  title        = {Efficient-market hypothesis --- {Wikipedia}{,} The Free Encyclopedia},
  howpublished = {\url{https://en.wikipedia.org/w/index.php?title=Efficient-market_hypothesis&oldid=839881156}},
  year         = {2018},
  note         = {[Online; accessed 8-May-2018]},
  groups       = {El Farol+ Minority Games+Markets},
}

@Misc{wiki:inclusive,
  author       = {{Wikipedia contributors}},
  title        = {Inclusive fitness --- {Wikipedia}{,} The Free Encyclopedia},
  howpublished = {\url{https://en.wikipedia.org/w/index.php?title=Inclusive_fitness&oldid=869050703}},
  year         = {2018},
  note         = {[Online; accessed 26-January-2019]},
}

@Misc{wiki:roshambo,
  author       = {{Wikipedia contributors}},
  title        = {Rock–paper–scissors --- {Wikipedia}{,} The Free Encyclopedia},
  howpublished = {\url{https://en.wikipedia.org/w/index.php?title=Rock%E2%80%93paper%E2%80%93scissors&oldid=841658701}},
  year         = {2018},
  note         = {[Online; accessed 28-May-2018]},
  groups       = {El Farol+ Minority Games+Markets},
}

@Misc{wiki:technical,
  author       = {{Wikipedia contributors}},
  title        = {Technical analysis --- {Wikipedia}{,} The Free Encyclopedia},
  howpublished = {\url{https://en.wikipedia.org/w/index.php?title=Technical_analysis&oldid=838615688}},
  year         = {2018},
  note         = {[Online; accessed 30-April-2018]},
  groups       = {El Farol+ Minority Games+Markets},
}

@Misc{Wilensky:1997,
  author  = {Uri Wilensky},
  title   = {NetLogo Wolf Sheep Predation model.},
  year    = {1997},
  address = {Center for Connected Learning and Computer-Based Modeling, Northwestern University, Evanston, IL.},
  groups  = {Ecology},
  url     = {http://ccl.northwestern.edu/netlogo/models/WolfSheepPredation},
}
@techreport{Wilensky:1999,
  added-at = {2010-03-02T17:25:53.000+0100},
  address = {Northwestern University, Evanston, IL},
  author = {Wilensky, Uri},
  bdsk-url-1 = {http://ccl.northwestern.edu/netlogo/},
  biburl = {https://www.bibsonomy.org/bibtex/25ab5c4c2b9fcef2df0928eb3c241f114/jrennstich},
  date-added = {2010-02-19 07:37:44 -0600},
  date-modified = {2010-02-28 21:03:37 -0500},
  institution = {Center for Connected Learning and Computer-Based Modeling},
  interhash = {605b6b5c9e21b6953f8cf3f5336d20f8},
  intrahash = {5ab5c4c2b9fcef2df0928eb3c241f114},
  keywords = {agent-based methodology modeling simulation},
  timestamp = {2010-03-08T19:44:40.000+0100},
  title = {NetLogo},
  type = {http://ccl.northwestern.edu/netlogo/},
  url = {http://ccl.northwestern.edu/netlogo/},
  year = 1999
}

@Article{zambrano2001boundedly,
  author  = {Zambrano, Eduardo},
  title   = {When Boundedly Rational Behavior is Rationalizable: The Case of the El Farol Problem},
  journal = {Journal of Public Economic Theory},
  year    = {2004},
  volume  = {6},
  number  = {2},
  groups  = {El Farol+ Minority Games+Markets},
}

@InCollection{,
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