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Generate both gene statistics & sequences from GeenuFF db #96

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alisandra opened this issue Aug 7, 2019 · 1 comment

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alisandra commented Aug 7, 2019

Be able to generate both length statistics (N50, total, longest, shortest, etc), and actual sequences for at least

mRNA
protein
pre-mRNA
introns
exons

and break the above down into all transcripts and longest transcripts (or proteins?) per super locus

alisandra added the enhancement label

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alisandra commented Aug 28, 2019

Still to do--

ranges:

UTRs
protein
CDS w/ phase accounted for
intergenic
upstream & downstream?

general functionality:

filter masked
statistical summary of lengths
post processing, e.g. kmer counting within extracted sequence

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