Metrics meaning change with mapped BAM?

[juanjo255]

Hello @wdecoster !

Thanks for this tool.

A question: the median, N50, etc, metrics change with a mapped BAM? for example the median would be the median length now would be the median mapped fragment?

Thanks!

Juan

[wdecoster]

Hi,

Yes, as it will only consider the primary mapped reads without --ubam.

Best,
Wouter