archive format error

[vallmer]

Greetings,

I keep running into the same error while using MosaikAligner:

ERROR: It seems that the input file (/home/vallmer/baboon/rheMac3.bam) is not in the MOSAIK reference sequence archive format.

What is the correct format?

Thank you,
Vallmer

[leandrogneves]

Hi Vallmer.

Did you format your reference to mosaik format? This can be done with MosaikBuild. Mosaik does not accept native fasta and fastq files.

See page 4 of the documentation:
https://code.google.com/p/mosaik-aligner/downloads/detail?name=Mosaik%201.0%20Documentation.pdf

Cheers