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Consider using LinkML #295

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VladimirAlexiev opened this issue Feb 1, 2022 · 4 comments
Closed

Consider using LinkML #295

VladimirAlexiev opened this issue Feb 1, 2022 · 4 comments

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@VladimirAlexiev
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@OR13 @nissimsan
For both Traceability, Edi3, Uncefact you use JSON Schema (plus a bit) as your modeling language.

But that's not enough because it leaves a lot of the semantic aspects loose.

Before trade & logistics had heard of semantics, life science people were doing massive cross-institutional semantic KGs. So check this out:

https://linkml.io/
https://github.com/linkml
Google "linkml" in particular see berkeleybop video etc

Last time I looked (1y ago) it was called BioLinkML and had peculiarities for their case. I think this had now been generalized.


Another option could be hackolade.com. It's commercial and doesn't yet have RDF stuff but explains very well the ideas of Polyglot Storage (or Polyglot Persistence)

@nissimsan
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LinkML looks awesome!

@VladimirAlexiev
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VladimirAlexiev commented Feb 1, 2022

@nissimsan
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No volunteers - closing.

@VladimirAlexiev
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@nissimsan @OR13 I agree that switching the tooling in the middle of the river may not be the best thing.

But how do you plan to fix #270?
JSON Schema doesn't have "typed references", so how will you express this most basic semantic thing
"use here this prop, which has that range".

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