Skip to content

Releases: voutcn/megahit

v1.0.2

15 Aug 08:20
Compare
Choose a tag to compare
  • Fixed a bug when number of large multiplicities > INT_MAX
  • Fixed dead loop in local assembler when # of reads is 0
  • Use mmap for edge/sdbg IO
  • Correct the rounding of edge multiplicity from float to integer

v1.0.1

31 Jul 05:29
Compare
Choose a tag to compare
  • Fixed number of SdBG edges 32-bit integer overflow.

v1.0.0-beta

23 Jul 14:53
Compare
Choose a tag to compare
v1.0.0-beta Pre-release
Pre-release
  • --presets option: preset parameters for different types of assembly
  • New CPU sorting design: faster kmer counting & graph construction
  • New unitig graph and edge multiplicity design: more accurate assembly
  • Merge bubble carefully at small k: reduce the occurrences of bubble collapsing
  • Power PC support

v0.3.3-a

10 Jul 07:41
Compare
Choose a tag to compare
  • Hotfix of incorrect max read length of multiple libraries
  • Hotfix of --input-cmd idling

v0.3.3

04 Jul 03:29
Compare
Choose a tag to compare
  • Fixed segmentation fault when a read is all N (#52)
  • Fixed continue mode: check continue mode before writing binary reads
  • Slightly improve SdBG traversal functions

v0.3.2-beta

28 Jun 17:53
Compare
Choose a tag to compare
v0.3.2-beta Pre-release
Pre-release
  • fine tune local assembly multi-thread schedules
  • fine tune SdBG builder memory usage

v0.3.0-beta3

22 Jun 14:50
Compare
Choose a tag to compare
v0.3.0-beta3 Pre-release
Pre-release
  • --verbose option
  • fixed a bug in reading paired-end reads of different length
  • print assembly stats to the end of the screen message
  • print read libraries info to the screen message, and number of reads in each libraries to the log file

We thank @tseemann for many valuable suggestions.

v0.3.0-beta2

20 Jun 05:19
Compare
Choose a tag to compare
v0.3.0-beta2 Pre-release
Pre-release
  • added the missing file citycrc.h

v0.3.0-beta

18 Jun 06:29
Compare
Choose a tag to compare
v0.3.0-beta Pre-release
Pre-release

0.3.0-beta / 2015-06-18 HKT

New features:

  • --max-read-len parameter no longer required
  • --memory option set to 0.9 by default
  • make use of PE informations (with local assembly)
  • --prune-level and --merge-level for setting pruning and merging intensity
  • --kmin-1pass option for assembling ultra low-coverage datasets in less memory
  • supporting bzip2 input files
  • useful tools in megahit_toolkit, including contig2fastg for conversion of contig files into SPAdes-like fastg

v0.2.1-a

02 Jun 07:56
Compare
Choose a tag to compare

Tiny update. Add -v/--version option.