From 0dc76da1b9b685d6cb8a71ff3d8a052d52bf6370 Mon Sep 17 00:00:00 2001 From: Chiara Monforte Date: Mon, 13 Nov 2023 09:59:39 +0100 Subject: [PATCH] Added SEA079_M16 yaml --- mission_yaml/SEA79_M16.yml | 602 +++++++++++++++++++++++++++++++++++++ 1 file changed, 602 insertions(+) create mode 100644 mission_yaml/SEA79_M16.yml diff --git a/mission_yaml/SEA79_M16.yml b/mission_yaml/SEA79_M16.yml new file mode 100644 index 0000000..9d4e4c3 --- /dev/null +++ b/mission_yaml/SEA79_M16.yml @@ -0,0 +1,602 @@ +metadata: + acknowledgement: This study used data collected and made freely available by Voice of the Ocean Foundation + (https://voiceoftheocean.org) accessed from https://erddap.observations.voiceoftheocean.org/erddap/index.html + institution: Voice of the Ocean Foundation + license: Creative Commons Attribution 4.0 (https://creativecommons.org/licenses/by/4.0/) + This study used data collected and made freely available by Voice of the Ocean Foundation + (https://voiceoftheocean.org) accessed from https://erddap.observations.voiceoftheocean.org/erddap/index.html + format_version: IOOS_Glider_NetCDF_v2.0.nc + glider_model: SeaExplorer + glider_instrument_name: seaexplorer + keywords: "AUVS, Autonomous Underwater Vehicles, Oceans, Ocean Pressure, + Water Pressure, Ocean Temperature, Water Temperature, + Salinity/Density, Conductivity, Density, Salinity" + keywords_vocabulary: GCMD Science Keywords + metadata_link: http://cfconventions.org/cf-conventions/v1.6.0/cf-conventions.html + Metadata_Conventions: CF-1.6, Unidata Dataset Discovery v1.0 + naming_authority: Voice of the Ocean Foundation + platform: "SeaExplorer Glider" + processing_level: "Data provided as is with no expressed or implied + assurance of quality assurance or quality control. L0" + publisher_email: callum.rollo@voiceoftheocean.org + publisher_name: Callum Rollo + publisher_url: https://voiceoftheocean.org + references: "created with pyglider https://github.com/c-proof/pyglider" + source: Observational data from a profiling glider. + standard_name_vocabulary: CF STandard Name Table v49 + sea_name: Baltic + transmission_system: IRIDIUM + glider_name: Loka + glider_serial: "79" + wmo_id: "8901001" + comment: 'deployment and recovery in Gotland' + contributor_name: Callum Rollo, Louise Biddle, Olle Petersson, Aleksandra Mazur, Marcus Melin, Gunnar Johnsson, Andrew Birkett, Chiara Monforte + contributor_role: Data Processor, PI, Head of Operations, Glider Technician, Glider Technician, Glider Technician, Glider Technician, Glider Pilot + creator_email: callum.rollo@voiceoftheocean.org + creator_name: Callum Rollo + creator_url: https://observations.voiceoftheocean.org + deployment_id: "16" + deployment_name: SAMBA + project: SAMBA + project_url: https://voiceoftheocean.org/samba-smart-autonomous-monitoring-of-the-baltic-sea/ + summary: ' Part of SAMBA continuous monitoring' + + +glider_devices: + ctd: + make: RBR + model: legato + serial: '212534' + long_name: RBR legato CTD + make_model: RBR legato CTD + factory_calibrated: "Yes" + calibration_date: "2022-10-21" + optics: + make: Wetlabs + model: FLBBCD + serial: '7619' + long_name: Wetlabs ECO Puck FLBBCD + make_model: Wetlabs FLBBCD + factory_calibrated: "Yes" + calibration_date: "2022-06-21" + calibration_parameters: {Chl_DarkCounts: 47, Chl_SF: 0.0121, CDOM_DarkCounts: 50, CDOM_SF: 0.0909, SIG_DarkCounts: 50, SIG_SF: 3.108E-06} + oxygen: + make: JFE Advantech + model: AROD-FT + serial: '0081' + long_name: JFE Advantech RINKO-FT + make_model: JFE Advantech AROD_FT + factory_calibrated: "Yes" + calibration_date: "2023-04-01" + + AD2CP: + make: Nortek + model: AD2CP + serial: '104649' + long_name: Nortek Glider1000 AD2CP + make_model: Nortek AD2CP + factory_calibrated: "Yes" + calibration_date: "2022-07-18" + + + +# map between glider variables and netcdf variables. This shouldn't +# change too much. +netcdf_variables: + keep_variables: ['temperature', 'oxygen_concentration', 'chlorophyll', 'ad2cp_heading'] + timebase: + source: NAV_LATITUDE +# Time and Place: + time: + source: time + long_name: Time + standard_name: time + calendar: gregorian + units: seconds since 1970-01-01T00:00:00Z + axis: T + observation_type: "measured" + coordinates: time depth latitude longitude + + latitude: + source: NAV_LATITUDE + long_name: latitude + standard_name: latitude + units: degrees_north + axis: Y + coordinates: time depth latitude longitude + conversion: nmea2deg + comment: "Estimated between surface fixes" + observation_type: measured + platform: platform + reference: WGS84 + valid_max: "90.0" + valid_min: "-90.0" + coordinate_reference_frame: urn:ogc:crs:EPSG::4326 + + longitude: + source: NAV_LONGITUDE + long_name: longitude + standard_name: longitude + units: degrees_east + axis: X + coordinates: time depth latitude longitude + conversion: nmea2deg + comment: "Estimated between surface fixes" + observation_type: measured + platform: platform + reference: WGS84 + valid_max: "180.0" + valid_min: "-180.0" + coordinate_reference_frame: urn:ogc:crs:EPSG::4326 + + nav_state: + source: NAV_RESOURCE + long_name: seaexplorer navigation state + standard_name: navigation_state + units: None + coordinates: time depth latitude longitude + + heading: + source: Heading + long_name: glider heading angle + standard_name: platform_orientation + units: degrees + coordinates: time depth latitude longitude + + pitch: + source: Pitch + long_name: glider pitch angle + standard_name: platform_pitch_angle + units: degrees + coordinates: time depth latitude longitude + + roll: + source: Roll + long_name: glider roll angle + standard_name: platform_roll_angle + units: degrees + coordinates: time depth latitude longitude + +# data parameters + + dive_num: + source: fnum + long_name: glider dive number from original SeaExplorer filename + standard_name: dive_number + units: None + coordinates: time depth latitude longitude + + security_level: + source: SecurityLevel + long_name: security level + standard_name: security_level + units: None + coordinates: time depth latitude longitude + + declination: + source: Declination + long_name: declination + standard_name: declination + units: None + coordinates: time depth latitude longitude + + internal_temperature: + source: Temperature + long_name: internal temperature + standard_name: internal_temperature + units: Celsius + coordinates: time depth latitude longitude + + internal_pressure: + source: Pa + long_name: internal pressure + standard_name: internal_pressure + units: Pa + coordinates: time depth latitude longitude + + desired_heading: + source: DesiredH + long_name: glider desired heading angle + standard_name: platform_desired_orientation + units: degrees + coordinates: time depth latitude longitude + + ballast_cmd: + source: BallastCmd + long_name: glider ballast command + standard_name: ballast_command + units: ml + coordinates: time depth latitude longitude + + ballast_pos: + source: BallastPos + long_name: glider ballast position + standard_name: ballast_position + units: ml + coordinates: time depth latitude longitude + + linear_cmd: + source: LinCmd + long_name: glider linear command + standard_name: linear_command + units: cm + coordinates: time depth latitude longitude + + linear_pos: + source: LinPos + long_name: glider linear position + standard_name: linear_position + units: cm + coordinates: time depth latitude longitude + + angular_cmd: + source: AngCmd + long_name: glider angular command + standard_name: angular_command + units: degrees + coordinates: time depth latitude longitude + + angular_pos: + source: AngPos + long_name: glider angular position + standard_name: angular_position + units: degrees + coordinates: time depth latitude longitude + + voltage: + source: Voltage + long_name: glider voltage + standard_name: platform_voltage + units: V + coordinates: time depth latitude longitude + + altimeter: + source: Altitude + long_name: glider altimeter reading + standard_name: glider_altimeter_reading + units: m + coordinates: time depth latitude longitude + + dead_reckoning: + source: DeadReckoning + long_name: dead reckoning + standard_name: dead_reckoning + units: None + coordinates: time depth latitude longitude + + nav_resource: + source: NAV_RESOURCE + long_name: nav resource + standard_name: nav_resource + units: None + coordinates: time depth latitude longitude + +# pld data params + + + conductivity: + source: LEGATO_CONDUCTIVITY + long_name: water conductivity + standard_name: sea_water_electrical_conductivity + units: mS cm-1 + coordinates: time depth latitude longitude + instrument: instrument_ctd + valid_min: "0." + valid_max: "85." + observation_type: "measured" + accuracy: "0.003" + resolution: "0.001" + + temperature: + source: LEGATO_TEMPERATURE + long_name: water temperature + standard_name: sea_water_temperature + units: Celsius + coordinates: time depth latitude longitude + instrument: instrument_ctd + valid_min: "-5" + valid_max: "42" + observation_type: "measured" + accuracy: "0.002" + resolution: "0.00005" + + pressure: + source: LEGATO_PRESSURE + long_name: water pressure + standard_name: sea_water_pressure + units: dbar + coordinates: time depth latitude longitude + valid_min: "0" + valid_max: "1000" + positive: "down" + reference_datum: "sea-surface" + instrument: "instrument_ctd" + observation_type: "measured" + accuracy: "0.5" + resolution: "0.01" + comment: "ctd pressure sensor" + + salinity: + source: LEGATO_SALINITY + long_name: water salinity + standard_name: sea_water_salinity + units: PSU + coordinates: time depth latitude longitude + instrument: instrument_ctd + valid_min: "0." + valid_max: "50." + observation_type: "calculated" + accuracy: "0.02" + resolution: "0.01" + +# optics: + chlorophyll: + source: FLBBCD_CHL_SCALED + long_name: chlorophyll + standard_name: concentration_of_chlorophyll_in_sea_water + units: mg m-3 + coordinates: time depth latitude longitude + instrument: instrument_flourometer + valid_min: "0." + valid_max: "50." + observation_type: "calculated" + sensitivity: "0.025" + + chlorophyll_raw: + source: FLBBCD_CHL_COUNT + long_name: raw chlorophyll + standard_name: raw_chlorophyll_in_sea_water + units: counts + coordinates: time depth latitude longitude + instrument: instrument_flourometer + + cdom: + source: FLBBCD_CDOM_SCALED + long_name: colored dissolved organic matter + standard_name: concentration_of_colored_dissolved_organic_matter_in_sea_water + units: mg m-3 + coordinates: time depth latitude longitude + instrument: instrument_flourometer + valid_min: "0." + valid_max: "375." + observation_type: "calculated" + sensitivity: "0.28" + + cdom_raw: + source: FLBBCD_CDOM_COUNT + long_name: raw colored dissolved organic matter + standard_name: raw_colored_dissolved_organic_matter_in_sea_water + units: counts + coordinates: time depth latitude longitude + instrument: instrument_scatterometer + + backscatter_scaled: + source: FLBBCD_BB_700_SCALED + long_name: "700 nm β total volume scattering coefficient at 117 degree angle" + standard_name: 700_nm_wavelength_total_volume_scattering_coefficient + units: m-1 sr-1 + coordinates: time depth latitude longitude + instrument: instrument_scatterometer + valid_min: "0." + valid_max: "3." + observation_type: "calculated" + sensitivity: "0.002" + + backscatter_raw: + source: FLBBCD_BB_700_COUNT + long_name: raw 700 nm wavelength backscatter + standard_name: raw_700_nm_wavelength_backscatter_in_sea_water + units: counts + coordinates: time depth latitude longitude + instrument: instrument_scatterometer + +# oxygen: + + oxygen_concentration: + source: AROD_FT_DO + long_name: oxygen concentration + standard_name: mole_concentration_of_dissolved_molecular_oxygen_in_sea_water + units: mmol m-3 + coordinates: time depth latitude longitude + correct_oxygen: "True" + reference_salinity: "0" + instrument: instrument_phosphorescence + valid_min: "0." + valid_max: "425." + observation_type: "calculated" + accuracy: "2% or 2.0" + resolution: "0.01" + + temperature_oxygen: + source: AROD_FT_TEMP + long_name: oxygen sensor temperature + standard_name: temperature_of_sensor_for_oxygen_in_sea_water + units: Celsius + coordinates: time depth latitude longitude + instrument: instrument_thermistor + valid_min: "-3." + valid_max: "45." + observation_type: "measured" + accuracy: "0.01" + resolution: "0.001" + +# AD2CP + ad2cp_heading: + source: AD2CP_HEADING + long_name: glider heading angle from AD2CP + standard_name: platform_orientation_ad2cp + units: degrees + coordinates: time depth latitude longitude + + ad2cp_pitch: + source: AD2CP_PITCH + long_name: glider pitch angle from AD2CP + standard_name: platform_pitch_angle_ad2cp + units: degrees + coordinates: time depth latitude longitude + + ad2cp_roll: + source: AD2CP_ROLL + long_name: glider roll angle from AD2CP + standard_name: platform_roll_angle_ad2cp + units: degrees + coordinates: time depth latitude longitude + + ad2cp_pressure: + source: AD2CP_PRESSURE + long_name: glider pressure from AD2CP + standard_name: platform_pressure_ad2cp + units: dbar + coordinates: time depth latitude longitude + + ad2cp_time: + source: AD2CP_TIME + long_name: AD2CP recorded time + standard_name: ad2cp_recorded_time + coordinates: time depth latitude longitude + + ad2cp_beam1_cell_number1: + source: AD2CP_V1_CN1 + long_name: glider beam 1 measure from AD2CP in cell 1 + standard_name: platform_beam1_measure_ad2cp_cell1 + units: m s-1 + coordinates: time depth latitude longitude + + ad2cp_beam2_cell_number1: + source: AD2CP_V2_CN1 + long_name: glider beam 2 measure from AD2CP in cell 1 + standard_name: platform_beam1_measure_ad2cp_cell1 + units: m s-1 + coordinates: time depth latitude longitude + + ad2cp_beam3_cell_number1: + source: AD2CP_V3_CN1 + long_name: glider beam 3 measure from AD2CP in cell 1 + standard_name: platform_beam1_measure_ad2cp_cell1 + units: m s-1 + coordinates: time depth latitude longitude + + ad2cp_beam4_cell_number1: + source: AD2CP_V4_CN1 + long_name: glider beam 4 measure from AD2CP in cell 1 + standard_name: platform_beam1_measure_ad2cp_cell1 + units: m s-1 + coordinates: time depth latitude longitude + +profile_variables: +# variables for extract_L1timeseries_profiles processing step... + profile_id: + comment: Sequential profile number within the trajectory. This value is unique in each file that is part of a single trajectory/deployment. + long_name: 'Profile ID' + valid_max: '2147483647' + valid_min: '1' + + profile_time: + comment: Timestamp corresponding to the mid-point of the profile + long_name: Profile Center Time + observation_type: calculated + platform: platform + standard_name: time + units: seconds since 1970-01-01T00:00:00Z + + profile_time_start: + comment: Timestamp corresponding to the start of the profile + long_name: Profile Start Time + observation_type: calculated + platform: platform + standard_name: time + units: seconds since 1970-01-01T00:00:00Z + + profile_time_end: + comment: Timestamp corresponding to the end of the profile + long_name: Profile End Time + observation_type: calculated + platform: platform + standard_name: time + units: seconds since 1970-01-01T00:00:00Z + + profile_lat: + comment: Value is interpolated to provide an estimate of the latitude at the mid-point of the profile + long_name: Profile Center Latitude + observation_type: calculated + platform: platform + standard_name: latitude + units: degrees_north + valid_max: "90.0" + valid_min: "-90.0" + + profile_lon: + comment: Value is interpolated to provide an estimate of the latitude at the mid-point of the profile + long_name: Profile Center Longitude + observation_type: calculated + platform: platform + standard_name: longitude + units: degrees_east + valid_max: "180.0" + valid_min: "-180.0" + + u: + comment: The depth-averaged current is an estimate of the net current measured while the glider is underwater. The value is calculated over the entire underwater segment, which may consist of 1 or more dives. + long_name: Depth-Averaged Eastward Sea Water Velocity + observation_type: calculated + platform: platform + standard_name: eastward_sea_water_velocity + units: m s-1 + valid_max: "10.0" + valid_min: "-10.0" + + v: + comment: The depth-averaged current is an estimate of the net current measured while the glider is underwater. The value is calculated over the entire underwater segment, which may consist of 1 or more dives. + long_name: Depth-Averaged Northward Sea Water Velocity + observation_type: calculated + platform: platform + standard_name: northward_sea_water_velocity + units: m s-1 + valid_max: "10.0" + valid_min: "-10.0" + + lon_uv: + comment: Not computed + long_name: Longitude + observation_type: calculated + platform: platform + standard_name: longitude + units: degrees_east + valid_max: "180.0" + valid_min: "-180.0" + + lat_uv: + comment: Not computed + long_name: Latitude + observation_type: calculated + platform: platform + standard_name: latitude + units: degrees_north + valid_max: "90.0" + valid_min: "-90.0" + + time_uv: + comment: Not computed + long_name: Time + standard_name: time + calendar: gregorian + units: seconds since 1970-01-01T00:00:00Z + observation_type: calculated + + instrument_ctd: + comment: unpumped RBR legato CTD + calibration_date: "2022-10-21" + factory_calibrated: "yes" + long_name: RBR legato CTD + make_model: RBR legato CTD + platform: platform + serial_number: "212534" + type: platform + +qc: + cdom: + value: 3 + comment: Previous deployments with this sensor showed a temporal decrease in CDOM. The copper plate protecting the optics sensor was removed and this issue appears to be resolved in this mission. The issue with the sensor has not yet been identified, further controls are recommended.More information on the history and updates regarding this issue ( https://observations.voiceoftheocean.org/data/updates). + cdom_raw: + value: 3 + comment: Previous deployments with this sensor showed a temporal decrease in CDOM. The copper plate protecting the optics sensor was removed and this issue appears to be resolved in this mission. The issue with the sensor has not yet been identified, further controls are recommended. More information on the history and updates regarding this issue ( https://observations.voiceoftheocean.org/data/updates). \ No newline at end of file