From 5dc4483e4687b4f5e9772f16cb908d8ec9aa5b27 Mon Sep 17 00:00:00 2001 From: Chiara Monforte Date: Thu, 14 Dec 2023 15:38:15 +0100 Subject: [PATCH 1/2] Added yaml SEA056_M68 --- mission_yaml/SEA56_M68.yml | 576 +++++++++++++++++++++++++++++++++++++ 1 file changed, 576 insertions(+) create mode 100644 mission_yaml/SEA56_M68.yml diff --git a/mission_yaml/SEA56_M68.yml b/mission_yaml/SEA56_M68.yml new file mode 100644 index 0000000..4582113 --- /dev/null +++ b/mission_yaml/SEA56_M68.yml @@ -0,0 +1,576 @@ +metadata: + acknowledgement: This study used data collected and made freely available by Voice of the Ocean Foundation + (https://voiceoftheocean.org) accessed from https://erddap.observations.voiceoftheocean.org/erddap/index.html + institution: Voice of the Ocean Foundation + license: Creative Commons Attribution 4.0 (https://creativecommons.org/licenses/by/4.0/) + This study used data collected and made freely available by Voice of the Ocean Foundation + (https://voiceoftheocean.org) accessed from https://erddap.observations.voiceoftheocean.org/erddap/index.html + format_version: IOOS_Glider_NetCDF_v2.0.nc + glider_model: SeaExplorer + glider_instrument_name: seaexplorer + keywords: "AUVS, Autonomous Underwater Vehicles, Oceans, Ocean Pressure, + Water Pressure, Ocean Temperature, Water Temperature, + Salinity/Density, Conductivity, Density, Salinity" + keywords_vocabulary: GCMD Science Keywords + metadata_link: http://cfconventions.org/cf-conventions/v1.6.0/cf-conventions.html + Metadata_Conventions: CF-1.6, Unidata Dataset Discovery v1.0 + naming_authority: Voice of the Ocean Foundation + platform: "SeaExplorer Glider" + processing_level: "Data provided as is with no expressed or implied + assurance of quality assurance or quality control. L0" + publisher_email: callum.rollo@voiceoftheocean.org + publisher_name: Callum Rollo + publisher_url: https://voiceoftheocean.org + references: "created with pyglider https://github.com/c-proof/pyglider" + source: Observational data from a profiling glider. + standard_name_vocabulary: CF STandard Name Table v49 + sea_name: Baltic + transmission_system: IRIDIUM + glider_name: Trift + glider_serial: "56" + wmo_id: "6801675" + comment: 'deployment and recovery in Åland' + contributor_name: Callum Rollo, Louise Biddle, Olle Petersson, Aleksandra Mazur, Marcus Melin, Gunnar Johnsson, Andrew Birkett, Chiara Monforte + contributor_role: Data Processor, PI, Head of Operations, Glider Technician, Glider Technician, Glider Technician, Glider Technician, Glider Pilot + creator_email: callum.rollo@voiceoftheocean.org + creator_name: Callum Rollo + creator_url: https://observations.voiceoftheocean.org + deployment_id: "68" + deployment_name: SAMBA + project: SAMBA + project_url: https://voiceoftheocean.org/samba-smart-autonomous-monitoring-of-the-baltic-sea/ + summary: ' Part of SAMBA continuous monitoring' + + +glider_devices: + ctd: + make: RBR + model: legato + serial: '230629' + long_name: RBR legato CTD + make_model: RBR legato CTD + factory_calibrated: "Yes" + calibration_date: "2023-06-14" + optics: + make: Wetlabs + model: FLNTU + serial: '6134' + long_name: Wetlabs ECO Puck FLNTU + make_model: Wetlabs FLNTU + factory_calibrated: "Yes" + calibration_date: "2020-02-06" + calibration_parameters: {Chl_DarkCounts: 48, Chl_SF: 0.0121, NTU_DarkCounts: 49, NTU_SF: 0.0061} + oxygen: + make: JFE Advantech + model: AROD-FT + serial: '0067' + long_name: JFE Advantech RINKO-FT + make_model: JFE Advantech AROD_FT + factory_calibrated: "Yes" + calibration_date: "2023-08-26" + AD2CP: + make: Nortek + model: AD2CP + serial: '103356' + long_name: Nortek Glider1000 AD2CP + make_model: Nortek AD2CP + factory_calibrated: "Yes" + calibration_date: "2023-10-19" + +# map between glider variables and netcdf variables. This shouldn't +# change too much. +netcdf_variables: + keep_variables: ['temperature', 'oxygen_concentration', 'chlorophyll', 'ad2cp_heading'] + timebase: + source: NAV_LATITUDE +# Time and Place: + time: + source: time + long_name: Time + standard_name: time + calendar: gregorian + units: seconds since 1970-01-01T00:00:00Z + axis: T + observation_type: "measured" + coordinates: time depth latitude longitude + + latitude: + source: NAV_LATITUDE + long_name: latitude + standard_name: latitude + units: degrees_north + axis: Y + coordinates: time depth latitude longitude + conversion: nmea2deg + comment: "Estimated between surface fixes" + observation_type: measured + platform: platform + reference: WGS84 + valid_max: "90.0" + valid_min: "-90.0" + coordinate_reference_frame: urn:ogc:crs:EPSG::4326 + + longitude: + source: NAV_LONGITUDE + long_name: longitude + standard_name: longitude + units: degrees_east + axis: X + coordinates: time depth latitude longitude + conversion: nmea2deg + comment: "Estimated between surface fixes" + observation_type: measured + platform: platform + reference: WGS84 + valid_max: "180.0" + valid_min: "-180.0" + coordinate_reference_frame: urn:ogc:crs:EPSG::4326 + + nav_state: + source: NAV_RESOURCE + long_name: seaexplorer navigation state + standard_name: navigation_state + units: None + coordinates: time depth latitude longitude + + heading: + source: Heading + long_name: glider heading angle + standard_name: platform_orientation + units: degrees + coordinates: time depth latitude longitude + + pitch: + source: Pitch + long_name: glider pitch angle + standard_name: platform_pitch_angle + units: degrees + coordinates: time depth latitude longitude + + roll: + source: Roll + long_name: glider roll angle + standard_name: platform_roll_angle + units: degrees + coordinates: time depth latitude longitude + +# data parameters + + + dive_num: + source: fnum + long_name: glider dive number from original SeaExplorer filename + standard_name: dive_number + units: None + coordinates: time depth latitude longitude + + + security_level: + source: SecurityLevel + long_name: security level + standard_name: security_level + units: None + coordinates: time depth latitude longitude + + declination: + source: Declination + long_name: declination + standard_name: declination + units: None + coordinates: time depth latitude longitude + + internal_temperature: + source: Temperature + long_name: internal temperature + standard_name: internal_temperature + units: Celsius + coordinates: time depth latitude longitude + + internal_pressure: + source: Pa + long_name: internal pressure + standard_name: internal_pressure + units: Pa + coordinates: time depth latitude longitude + + desired_heading: + source: DesiredH + long_name: glider desired heading angle + standard_name: platform_desired_orientation + units: degrees + coordinates: time depth latitude longitude + + ballast_cmd: + source: BallastCmd + long_name: glider ballast command + standard_name: ballast_command + units: ml + coordinates: time depth latitude longitude + + ballast_pos: + source: BallastPos + long_name: glider ballast position + standard_name: ballast_position + units: ml + coordinates: time depth latitude longitude + + linear_cmd: + source: LinCmd + long_name: glider linear command + standard_name: linear_command + units: cm + coordinates: time depth latitude longitude + + linear_pos: + source: LinPos + long_name: glider linear position + standard_name: linear_position + units: cm + coordinates: time depth latitude longitude + + angular_cmd: + source: AngCmd + long_name: glider angular command + standard_name: angular_command + units: degrees + coordinates: time depth latitude longitude + + angular_pos: + source: AngPos + long_name: glider angular position + standard_name: angular_position + units: degrees + coordinates: time depth latitude longitude + + voltage: + source: Voltage + long_name: glider voltage + standard_name: platform_voltage + units: V + coordinates: time depth latitude longitude + + altimeter: + source: Altitude + long_name: glider altimeter reading + standard_name: glider_altimeter_reading + units: m + coordinates: time depth latitude longitude + + dead_reckoning: + source: DeadReckoning + long_name: dead reckoning + standard_name: dead_reckoning + units: None + coordinates: time depth latitude longitude + + nav_resource: + source: NAV_RESOURCE + long_name: nav resource + standard_name: nav_resource + units: None + coordinates: time depth latitude longitude + +# pld data params + + + conductivity: + source: LEGATO_CONDUCTIVITY + long_name: water conductivity + standard_name: sea_water_electrical_conductivity + units: mS cm-1 + coordinates: time depth latitude longitude + instrument: instrument_ctd + valid_min: "0." + valid_max: "85." + observation_type: "measured" + accuracy: "0.003" + resolution: "0.001" + + temperature: + source: LEGATO_TEMPERATURE + long_name: water temperature + standard_name: sea_water_temperature + units: Celsius + coordinates: time depth latitude longitude + instrument: instrument_ctd + valid_min: "-5" + valid_max: "42" + observation_type: "measured" + accuracy: "0.002" + resolution: "0.00005" + + pressure: + source: LEGATO_PRESSURE + long_name: water pressure + standard_name: sea_water_pressure + units: dbar + coordinates: time depth latitude longitude + valid_min: "0" + valid_max: "1000" + positive: "down" + reference_datum: "sea-surface" + instrument: "instrument_ctd" + observation_type: "measured" + accuracy: "0.5" + resolution: "0.01" + comment: "ctd pressure sensor" + + salinity: + source: LEGATO_SALINITY + long_name: water salinity + standard_name: sea_water_salinity + units: PSU + coordinates: time depth latitude longitude + instrument: instrument_ctd + valid_min: "0." + valid_max: "50." + observation_type: "calculated" + accuracy: "0.02" + resolution: "0.01" + +# optics: + chlorophyll: + source: FLNTU_CHL_SCALED + long_name: chlorophyll + standard_name: concentration_of_chlorophyll_in_sea_water + units: mg m-3 + coordinates: time depth latitude longitude + instrument: instrument_flourometer + valid_min: "0." + valid_max: "50." + observation_type: "calculated" + sensitivity: "0.025" + + chlorophyll_raw: + source: FLNTU_CHL_COUNT + long_name: raw chlorophyll + standard_name: raw_chlorophyll_in_sea_water + units: counts + coordinates: time depth latitude longitude + instrument: instrument_flourometer + + turbidity: + source: FLNTU_NTU_SCALED + long_name: turbidity + standard_name: turbidity_in_sea_water + units: NTU + coordinates: time depth latitude longitude + instrument: instrument_turbidity_meter + valid_min: "0." + valid_max: "25." + observation_type: "calculated" + sensitivity: "0.01" + + turbidity_raw: + source: FLNTU_NTU_COUNT + long_name: raw turbidity + standard_name: raw_turbidity_in_sea_water + units: counts + coordinates: time depth latitude longitude + instrument: instrument_flourometer + +# oxygen: + oxygen_concentration: + source: AROD_FT_DO + long_name: oxygen concentration + standard_name: mole_concentration_of_dissolved_molecular_oxygen_in_sea_water + units: mmol m-3 + coordinates: time depth latitude longitude + correct_oxygen: "True" + reference_salinity: "0" + instrument: instrument_phosphorescence + valid_min: "0." + valid_max: "425." + observation_type: "calculated" + accuracy: "2% or 2.0" + resolution: "0.01" + + temperature_oxygen: + source: AROD_FT_TEMP + long_name: oxygen sensor temperature + standard_name: temperature_of_sensor_for_oxygen_in_sea_water + units: Celsius + coordinates: time depth latitude longitude + instrument: instrument_thermistor + valid_min: "-3." + valid_max: "45." + observation_type: "measured" + accuracy: "0.01" + resolution: "0.001" + +# AD2CP + ad2cp_heading: + source: AD2CP_HEADING + long_name: glider heading angle from AD2CP + standard_name: platform_orientation_ad2cp + units: degrees + coordinates: time depth latitude longitude + + ad2cp_pitch: + source: AD2CP_PITCH + long_name: glider pitch angle from AD2CP + standard_name: platform_pitch_angle_ad2cp + units: degrees + coordinates: time depth latitude longitude + + ad2cp_roll: + source: AD2CP_ROLL + long_name: glider roll angle from AD2CP + standard_name: platform_roll_angle_ad2cp + units: degrees + coordinates: time depth latitude longitude + + ad2cp_pressure: + source: AD2CP_PRESSURE + long_name: glider pressure from AD2CP + standard_name: platform_pressure_ad2cp + units: dbar + coordinates: time depth latitude longitude + + ad2cp_time: + source: AD2CP_TIME + long_name: AD2CP recorded time + standard_name: ad2cp_recorded_time + coordinates: time depth latitude longitude + + ad2cp_beam1_cell_number1: + source: AD2CP_V1_CN1 + long_name: glider beam 1 measure from AD2CP in cell 1 + standard_name: platform_beam1_measure_ad2cp_cell1 + units: m s-1 + coordinates: time depth latitude longitude + + ad2cp_beam2_cell_number1: + source: AD2CP_V2_CN1 + long_name: glider beam 2 measure from AD2CP in cell 1 + standard_name: platform_beam1_measure_ad2cp_cell1 + units: m s-1 + coordinates: time depth latitude longitude + + ad2cp_beam3_cell_number1: + source: AD2CP_V3_CN1 + long_name: glider beam 3 measure from AD2CP in cell 1 + standard_name: platform_beam1_measure_ad2cp_cell1 + units: m s-1 + coordinates: time depth latitude longitude + + ad2cp_beam4_cell_number1: + source: AD2CP_V4_CN1 + long_name: glider beam 4 measure from AD2CP in cell 1 + standard_name: platform_beam1_measure_ad2cp_cell1 + units: m s-1 + coordinates: time depth latitude longitude + + +profile_variables: +# variables for extract_L1timeseries_profiles processing step... + profile_id: + comment: Sequential profile number within the trajectory. This value is unique in each file that is part of a single trajectory/deployment. + long_name: 'Profile ID' + valid_max: '2147483647' + valid_min: '1' + + profile_time: + comment: Timestamp corresponding to the mid-point of the profile + long_name: Profile Center Time + observation_type: calculated + platform: platform + standard_name: time + units: seconds since 1970-01-01T00:00:00Z + + profile_time_start: + comment: Timestamp corresponding to the start of the profile + long_name: Profile Start Time + observation_type: calculated + platform: platform + standard_name: time + units: seconds since 1970-01-01T00:00:00Z + + profile_time_end: + comment: Timestamp corresponding to the end of the profile + long_name: Profile End Time + observation_type: calculated + platform: platform + standard_name: time + units: seconds since 1970-01-01T00:00:00Z + + profile_lat: + comment: Value is interpolated to provide an estimate of the latitude at the mid-point of the profile + long_name: Profile Center Latitude + observation_type: calculated + platform: platform + standard_name: latitude + units: degrees_north + valid_max: "90.0" + valid_min: "-90.0" + + profile_lon: + comment: Value is interpolated to provide an estimate of the latitude at the mid-point of the profile + long_name: Profile Center Longitude + observation_type: calculated + platform: platform + standard_name: longitude + units: degrees_east + valid_max: "180.0" + valid_min: "-180.0" + + u: + comment: The depth-averaged current is an estimate of the net current measured while the glider is underwater. The value is calculated over the entire underwater segment, which may consist of 1 or more dives. + long_name: Depth-Averaged Eastward Sea Water Velocity + observation_type: calculated + platform: platform + standard_name: eastward_sea_water_velocity + units: m s-1 + valid_max: "10.0" + valid_min: "-10.0" + + v: + comment: The depth-averaged current is an estimate of the net current measured while the glider is underwater. The value is calculated over the entire underwater segment, which may consist of 1 or more dives. + long_name: Depth-Averaged Northward Sea Water Velocity + observation_type: calculated + platform: platform + standard_name: northward_sea_water_velocity + units: m s-1 + valid_max: "10.0" + valid_min: "-10.0" + + lon_uv: + comment: Not computed + long_name: Longitude + observation_type: calculated + platform: platform + standard_name: longitude + units: degrees_east + valid_max: "180.0" + valid_min: "-180.0" + + lat_uv: + comment: Not computed + long_name: Latitude + observation_type: calculated + platform: platform + standard_name: latitude + units: degrees_north + valid_max: "90.0" + valid_min: "-90.0" + + time_uv: + comment: Not computed + long_name: Time + standard_name: time + calendar: gregorian + units: seconds since 1970-01-01T00:00:00Z + observation_type: calculated + + instrument_ctd: + comment: unpumped RBR legato CTD + calibration_date: "2023-06-14" + factory_calibrated: "yes" + long_name: RBR legato CTD + make_model: RBR legato CTD + platform: platform + serial_number: "230629" + type: platform + +qc: + From 7e50836fa52af1eb192f6efa546536344b735ee6 Mon Sep 17 00:00:00 2001 From: Chiara Monforte Date: Thu, 14 Dec 2023 15:42:22 +0100 Subject: [PATCH 2/2] Removed qc --- mission_yaml/SEA56_M68.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/mission_yaml/SEA56_M68.yml b/mission_yaml/SEA56_M68.yml index 4582113..6ea959c 100644 --- a/mission_yaml/SEA56_M68.yml +++ b/mission_yaml/SEA56_M68.yml @@ -572,5 +572,4 @@ profile_variables: serial_number: "230629" type: platform -qc: