Issue with running denovo_motifs

[krovi137]

Hello,

I am currently attempting to identify the denovo motifs enriched in a different mouse strain using the denovo_motifs function but keep receiving the following errors:

Loading shift vectors
Use of uninitialized value in hash dereference at /home/rstudio/MMARGE/MMARGE_v1.0//bin/general.pm line 47.
Skip peaks for chromosome X allele 1 in get_seq_for_peaks
Intervals must have positive width at /home/rstudio/MMARGE/MMARGE_v1.0//bin/analysis_tree.pm line 1079.
readline() on closed filehandle IN at /home/rstudio/homer/bin/cleanUpSequences.pl line 31.

Please let me know how best to proceed.

Thanks!
Harsha

[krovi137]

Hello,

I hope you're doing well! I was wondering if you would be able to assist with this problem? I still have not yet been able to resolve this issue. Any help would be sincerely appreciated!! Thank you so much!

Harsha