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Enhance heatmap plotting #15

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genomics-kl opened this issue Jan 30, 2020 · 0 comments
Open
4 tasks

Enhance heatmap plotting #15

genomics-kl opened this issue Jan 30, 2020 · 0 comments
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enhancement New feature or request

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@genomics-kl
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genomics-kl commented Jan 30, 2020

  • New function to filter out intersections of DE genes from bbcSE object. Usage: intersect_degs(bbc_obj, de_in=list(contrastA, contrastB, contrastC)). Can implement venn::venn or similar to do this easily.

  • Add ability to filter columns by regex. Can just implement using grep.

  • Option to plot either log normalized counts, their means or LFCs parsed from the contrasts stored in bbcSE.

  • New function to extract the Ensembl IDs for specific gene sets from KEGG, Reactome etc

@genomics-kl genomics-kl added the enhancement New feature or request label Jan 30, 2020
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