diff --git a/Cargo.lock b/Cargo.lock index b7cc64e..31eccbc 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -293,15 +293,6 @@ version = "1.0.79" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "080e9890a082662b09c1ad45f567faeeb47f22b5fb23895fbe1e651e718e25ca" -[[package]] -name = "approx" -version = "0.5.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cab112f0a86d568ea0e627cc1d6be74a1e9cd55214684db5561995f6dad897c6" -dependencies = [ - "num-traits", -] - [[package]] name = "aquamarine" version = "0.1.12" @@ -442,12 +433,6 @@ version = "3.14.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7f30e7476521f6f8af1a1c4c0b8cc94f0bee37d91763d0ca2665f299b6cd8aec" -[[package]] -name = "bytemuck" -version = "1.14.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "374d28ec25809ee0e23827c2ab573d729e293f281dfe393500e7ad618baa61c6" - [[package]] name = "byteorder" version = "1.5.0" @@ -1158,13 +1143,12 @@ dependencies = [ [[package]] name = "hpo" -version = "0.8.1" +version = "0.10.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b1ff6300a69364cd64636a5076291f56812f87923d01ef764655cb6ab79546fa" +checksum = "ecca80c2b0e813bf39e0042a2fa62601459843872deff518fc22846dc57771da" dependencies = [ "aquamarine", "smallvec", - "statrs", "thiserror", "tracing", ] @@ -1454,12 +1438,6 @@ version = "0.2.151" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "302d7ab3130588088d277783b1e2d2e10c9e9e4a16dd9050e6ec93fb3e7048f4" -[[package]] -name = "libm" -version = "0.2.8" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4ec2a862134d2a7d32d7983ddcdd1c4923530833c9f2ea1a44fc5fa473989058" - [[package]] name = "libredox" version = "0.0.1" @@ -1554,16 +1532,6 @@ dependencies = [ "regex-automata 0.1.10", ] -[[package]] -name = "matrixmultiply" -version = "0.3.8" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7574c1cf36da4798ab73da5b215bbf444f50718207754cb522201d78d1cd0ff2" -dependencies = [ - "autocfg", - "rawpointer", -] - [[package]] name = "measure_time" version = "0.8.2" @@ -1653,35 +1621,6 @@ version = "0.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d9380db4c04d219ac5c51d14996bbf2c2e9a15229771b53f8671eb6c83cf44df" -[[package]] -name = "nalgebra" -version = "0.29.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d506eb7e08d6329505faa8a3a00a5dcc6de9f76e0c77e4b75763ae3c770831ff" -dependencies = [ - "approx", - "matrixmultiply", - "nalgebra-macros", - "num-complex", - "num-rational", - "num-traits", - "rand 0.8.5", - "rand_distr", - "simba", - "typenum", -] - -[[package]] -name = "nalgebra-macros" -version = "0.1.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "01fcc0b8149b4632adc89ac3b7b31a12fb6099a0317a4eb2ebff574ef7de7218" -dependencies = [ - "proc-macro2", - "quote", - "syn 1.0.109", -] - [[package]] name = "nom" version = "7.1.3" @@ -1702,36 +1641,6 @@ dependencies = [ "winapi", ] -[[package]] -name = "num-complex" -version = "0.4.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1ba157ca0885411de85d6ca030ba7e2a83a28636056c7c699b07c8b6f7383214" -dependencies = [ - "num-traits", -] - -[[package]] -name = "num-integer" -version = "0.1.45" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "225d3389fb3509a24c93f5c29eb6bde2586b98d9f016636dff58d7c6f7569cd9" -dependencies = [ - "autocfg", - "num-traits", -] - -[[package]] -name = "num-rational" -version = "0.4.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0638a1c9d0a3c0914158145bc76cff373a75a627e6ecbfb71cbe6f453a5a19b0" -dependencies = [ - "autocfg", - "num-integer", - "num-traits", -] - [[package]] name = "num-traits" version = "0.2.17" @@ -1739,7 +1648,6 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "39e3200413f237f41ab11ad6d161bc7239c84dcb631773ccd7de3dfe4b5c267c" dependencies = [ "autocfg", - "libm", ] [[package]] @@ -2199,22 +2107,6 @@ dependencies = [ "getrandom", ] -[[package]] -name = "rand_distr" -version = "0.4.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "32cb0b9bc82b0a0876c2dd994a7e7a2683d3e7390ca40e6886785ef0c7e3ee31" -dependencies = [ - "num-traits", - "rand 0.8.5", -] - -[[package]] -name = "rawpointer" -version = "0.2.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3" - [[package]] name = "rayon" version = "1.8.0" @@ -2542,15 +2434,6 @@ version = "1.0.16" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f98d2aa92eebf49b69786be48e4477826b256916e84a57ff2a4f21923b48eb4c" -[[package]] -name = "safe_arch" -version = "0.7.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f398075ce1e6a179b46f51bd88d0598b92b00d3551f1a2d4ac49e771b56ac354" -dependencies = [ - "bytemuck", -] - [[package]] name = "same-file" version = "1.0.6" @@ -2720,19 +2603,6 @@ dependencies = [ "libc", ] -[[package]] -name = "simba" -version = "0.6.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f0b7840f121a46d63066ee7a99fc81dcabbc6105e437cae43528cea199b5a05f" -dependencies = [ - "approx", - "num-complex", - "num-traits", - "paste", - "wide", -] - [[package]] name = "similar" version = "2.3.0" @@ -2802,19 +2672,6 @@ version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a2eb9349b6444b326872e140eb1cf5e7c522154d69e7a0ffb0fb81c06b37543f" -[[package]] -name = "statrs" -version = "0.16.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2d08e5e1748192713cc281da8b16924fb46be7b0c2431854eadc785823e5696e" -dependencies = [ - "approx", - "lazy_static", - "nalgebra", - "num-traits", - "rand 0.8.5", -] - [[package]] name = "strsim" version = "0.10.0" @@ -3606,16 +3463,6 @@ dependencies = [ "rustix", ] -[[package]] -name = "wide" -version = "0.7.13" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c68938b57b33da363195412cfc5fc37c9ed49aa9cfe2156fde64b8d2c9498242" -dependencies = [ - "bytemuck", - "safe_arch", -] - [[package]] name = "winapi" version = "0.3.9" diff --git a/Cargo.toml b/Cargo.toml index b96a2a9..a0444d1 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -20,7 +20,7 @@ env_logger = "0.10" fastobo = "0.15.2" fastrand = "2.1" flate2 = "1.0" -hpo = "0.8" +hpo = "0.10" indexmap = { version = "2.2", features = ["serde"] } indicatif = { version = "0.17", features = ["rayon"] } itertools = "0.12"