feat: split frequency type further

[holtgrewe]

No description provided.

[github-actions]

deps-report 🔍

Commit scanned: 332b4c5
ℹ️ Python version 3.10 is used by your project but the latest version is 3.12.

Vulnerable dependencies

4 dependencies have vulnerabilities 😱

Dependency	Advisory	Versions impacted
djangorestframework (transitive)	Affected versions of the package djangorestframework are vulnerable to Cross-site Scripting (XSS) via the break_long_headers template filter due to improper input sanitization before splitting and joining with	<3.15.2
jinja2 (transitive)	In Jinja2, the from_string function is prone to Server Side Template Injection (SSTI) where it takes the "source" parameter as a template object, renders it, and then returns it. The attacker can exploit it with {{INJECTION COMMANDS}} in a URI. NOTE: The maintainer and multiple third parties believe that this vulnerability isn't valid because users shouldn't use untrusted templates without sandboxing.	>=0
pyopenssl (transitive)	CVE-2023-6129 affects PyOpenSSL versions starting from 22.0.0 due to a vulnerability in the POLY1305 MAC algorithm on PowerPC CPUs. This issue could lead to state corruption in applications, causing inaccurate outcomes or service disruptions. Attackers need specific conditions to exploit this flaw, including the ability to manipulate the algorithm's use and reliance on certain system registers by the application.	>=22.0.0
sqlalchemy	Sqlalchemy 2.0.0b1 avoids leaking cleartext passwords to the open for careless uses of str(engine.URL()) in logs and prints. sqlalchemy/sqlalchemy#8563	<2.0.0b1

Outdated dependencies

36 outdated dependencies found (including 13 outdated major versions)😢

Dependency	Installed version	Latest version
argon2-cffi (transitive)	21.3.0	23.1.0
billiard (transitive)	3.6.4.0	4.2.0
crispy-bootstrap4 (transitive)	2022.1	2024.1
django	3.2.25	5.0.6
mistune (transitive)	2.0.5	3.0.2
packaging (transitive)	23.2	24.1
protobuf	3.20.3	5.27.2
setuptools (transitive)	67.6.1	70.2.0
sphinx (transitive)	6.2.1	7.3.7
sphinx-rtd-theme (transitive)	1.2.2	2.0.0
sqlalchemy	1.4.52	2.0.31
unidecode (transitive)	0.4.21	1.3.8
xmlschema (transitive)	2.5.1	3.3.1

Dependency	Installed version	Latest version
botocore (transitive)	1.34.131	1.34.140
celery (transitive)	5.2.7	5.4.0
django-autocomplete-light (transitive)	3.9.4	3.11.0
django-crispy-forms (transitive)	2.0	2.2
django-db-file-storage (transitive)	0.5.5	0.5.6.1
django-debug-toolbar	4.3.0	4.4.5
django-environ (transitive)	0.10.0	0.11.2
django-iconify (transitive)	0.1.1	0.4
django-model-utils (transitive)	4.3.1	4.5.1
django-plugins-bihealth	0.4.0	0.5.2
django-postgres-copy	2.3.7	2.7.4
django-pydantic-field	0.3.9	0.3.10
djangorestframework (transitive)	3.14.0	3.15.2
docutils (transitive)	0.18.1	0.21.2
drf-keyed-list-bihealth	0.1.1	0.2.1
markdown (transitive)	3.4.1	3.6
requests-http-signature	0.2.0	0.7.1
rpds-py (transitive)	0.18.1	0.19.0
rules (transitive)	3.3	3.4
sentry-sdk	2.7.1	2.8.0
trio (dev,transitive)	0.25.1	0.26.0
versioneer (transitive)	0.28	0.29
wheel (transitive)	0.40.0	0.43.0

_Logs

[codecov]

Codecov Report

Attention: Patch coverage is 98.07692% with 2 lines in your changes missing coverage. Please review.

Project coverage is 91%. Comparing base (b1fa2b5) to head (2e34360).

Additional details and impacted files

@@          Coverage Diff          @@
##            main   #1784   +/-   ##
=====================================
  Coverage     91%     91%           
=====================================
  Files        646     647    +1     
  Lines      36475   36517   +42     
=====================================
+ Hits       33430   33470   +40     
- Misses      3045    3047    +2     

Files	Coverage Δ
backend/config/urls.py	77% <ø> (-2%)	⬇️
backend/seqvars/factory_defaults.py	86% <ø> (ø)
...kend/seqvars/migrations/0002_auto_20240708_1305.py	100% <100%> (ø)
backend/seqvars/models.py	98% <100%> (+<1%)	⬆️
backend/seqvars/serializers.py	98% <100%> (-1%)	⬇️
backend/seqvars/tests/factories.py	99% <100%> (+<1%)	⬆️
...vars/tests/snapshots/snap_test_factory_defaults.py	100% <ø> (ø)
...end/seqvars/tests/snapshots/snap_test_views_api.py	100% <ø> (ø)
backend/seqvars/tests/test_permissions_api.py	100% <100%> (ø)
backend/seqvars/tests/test_serializers.py	100% <100%> (ø)
... and 1 more

[Gregoor]

@holtgrewe it looks like type introspection did not work here

[holtgrewe]

Sorry @Gregoor Will fix on Wednesday. Will be the equivalent of

varfish-server/backend/seqvars/models.py

Line 21 in 3c325fe

class GnomadNuclearFrequencySettings(pydantic.BaseModel):

[holtgrewe]

Should work after #1786

[Gregoor]

Thank you!