diff --git a/Makefile b/Makefile
index 949eb97fb..708aef8b3 100644
--- a/Makefile
+++ b/Makefile
@@ -51,7 +51,8 @@ docs:
 
 .PHONY: celery
 celery:
-	celery -A config.celery_app worker -l info --concurrency=4 --beat
+	pipenv run watchmedo auto-restart --directory=./ --pattern=*.py --recursive -- \
+		celery -A config.celery_app worker -l info --concurrency=4 --beat
 
 .PHONY: geticons
 geticons:
diff --git a/Pipfile b/Pipfile
index 8b63433ec..209ad3513 100644
--- a/Pipfile
+++ b/Pipfile
@@ -79,6 +79,7 @@ tblib = "~=3.0.0"
 # packages for local development
 ipdb = "*"
 jedi = "==0.19.1"
+watchdog = "*"
 werkzeug = "~=3.0.0"
 
 [ldap-packages]
diff --git a/Pipfile.lock b/Pipfile.lock
index 0d47a2f82..ae2c82580 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "6a86a6a51b338133a20d5047f9cfce504822014d5a59a4d468884798f5a2314a"
+            "sha256": "84a4516d1f5d1e67bda845f70e5ffa4989e4a48a3f82f08877b2bb4826dfb52e"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -18,93 +18,93 @@
     "default": {
         "aiobotocore": {
             "hashes": [
-                "sha256:4c5b1bf01e7aab74a29bd783159517ecf6d45b5a1647e53302e9554c064e420a",
-                "sha256:6eaf48a6ccd3943ce7d26f75dc8fa0292b7a1a069bd5a9557d37fae5adf14d2d"
+                "sha256:487fede588040bfa3a43df945275c28c1c73ca75bf705295adb9fbadd2e89be7",
+                "sha256:6dd7352248e3523019c5a54a395d2b1c31080697fc80a9ad2672de4eec8c7abd"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==2.11.0"
+            "version": "==2.11.2"
         },
         "aiohttp": {
             "hashes": [
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-                "sha256:04fa38875e53eb7e354ece1607b1d2fdee2d175ea4e4d745f6ec9f751fe20c7c",
-                "sha256:0b0a6a36ed7e164c6df1e18ee47afbd1990ce47cb428739d6c99aaabfaf1b3af",
-                "sha256:0d406b01a9f5a7e232d1b0d161b40c05275ffbcbd772dc18c1d5a570961a1ca4",
-                "sha256:0e49b08eafa4f5707ecfb321ab9592717a319e37938e301d462f79b4e860c32a",
-                "sha256:0e7ba7ff228c0d9a2cd66194e90f2bca6e0abca810b786901a569c0de082f489",
-                "sha256:11cb254e397a82efb1805d12561e80124928e04e9c4483587ce7390b3866d213",
-                "sha256:11ff168d752cb41e8492817e10fb4f85828f6a0142b9726a30c27c35a1835f01",
-                "sha256:176df045597e674fa950bf5ae536be85699e04cea68fa3a616cf75e413737eb5",
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+                "sha256:8aacb477dc26797ee089721536a292a664846489c49d3ef9725f992449eda5a8",
+                "sha256:8e2c45c208c62e955e8256949eb225bd8b66a4c9b6865729a786f2aa79b72e9d",
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+                "sha256:939677b61f9d72a4fa2a042a5eee2a99a24001a67c13da113b2e30396567db54",
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+                "sha256:a78ed8a53a1221393d9637c01870248a6f4ea5b214a59a92a36f18151739452c",
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+                "sha256:abf151955990d23f84205286938796c55ff11bbfb4ccfada8c9c83ae6b3c89a3",
+                "sha256:acef0899fea7492145d2bbaaaec7b345c87753168589cc7faf0afec9afe9b747",
+                "sha256:b40670ec7e2156d8e57f70aec34a7216407848dfe6c693ef131ddf6e76feb672",
+                "sha256:b791a3143681a520c0a17e26ae7465f1b6f99461a28019d1a2f425236e6eedb5",
+                "sha256:b955ed993491f1a5da7f92e98d5dad3c1e14dc175f74517c4e610b1f2456fb11",
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+                "sha256:bca77a198bb6e69795ef2f09a5f4c12758487f83f33d63acde5f0d4919815768",
+                "sha256:c3452ea726c76e92f3b9fae4b34a151981a9ec0a4847a627c43d71a15ac32aa6",
+                "sha256:c46956ed82961e31557b6857a5ca153c67e5476972e5f7190015018760938da2",
+                "sha256:c7c8b816c2b5af5c8a436df44ca08258fc1a13b449393a91484225fcb7545533",
+                "sha256:cd73265a9e5ea618014802ab01babf1940cecb90c9762d8b9e7d2cc1e1969ec6",
+                "sha256:dad46e6f620574b3b4801c68255492e0159d1712271cc99d8bdf35f2043ec266",
+                "sha256:dc9b311743a78043b26ffaeeb9715dc360335e5517832f5a8e339f8a43581e4d",
+                "sha256:df822ee7feaaeffb99c1a9e5e608800bd8eda6e5f18f5cfb0dc7eeb2eaa6bbec",
+                "sha256:e083c285857b78ee21a96ba1eb1b5339733c3563f72980728ca2b08b53826ca5",
+                "sha256:e5e46b578c0e9db71d04c4b506a2121c0cb371dd89af17a0586ff6769d4c58c1",
+                "sha256:e99abf0bba688259a496f966211c49a514e65afa9b3073a1fcee08856e04425b",
+                "sha256:ee43080e75fc92bf36219926c8e6de497f9b247301bbf88c5c7593d931426679",
+                "sha256:f033d80bc6283092613882dfe40419c6a6a1527e04fc69350e87a9df02bbc283",
+                "sha256:f1088fa100bf46e7b398ffd9904f4808a0612e1d966b4aa43baa535d1b6341eb",
+                "sha256:f56455b0c2c7cc3b0c584815264461d07b177f903a04481dfc33e08a89f0c26b",
+                "sha256:f59dfe57bb1ec82ac0698ebfcdb7bcd0e99c255bd637ff613760d5f33e7c81b3",
+                "sha256:f7217af2e14da0856e082e96ff637f14ae45c10a5714b63c77f26d8884cf1051",
+                "sha256:f734e38fd8666f53da904c52a23ce517f1b07722118d750405af7e4123933511",
+                "sha256:f95511dd5d0e05fd9728bac4096319f80615aaef4acbecb35a990afebe953b0e",
+                "sha256:fdd215b7b7fd4a53994f238d0f46b7ba4ac4c0adb12452beee724ddd0743ae5d",
+                "sha256:feeb18a801aacb098220e2c3eea59a512362eb408d4afd0c242044c33ad6d542",
+                "sha256:ff30218887e62209942f91ac1be902cc80cddb86bf00fbc6783b7a43b2bea26f"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==3.9.1"
+            "version": "==3.9.3"
         },
         "aioitertools": {
             "hashes": [
@@ -136,6 +136,7 @@
                 "sha256:a739e2924bf7940daee3a17ccec99fd7175363a160d6e8c3329e61d6534a165e"
             ],
             "index": "pypi",
+            "markers": "python_version < '4.0' and python_full_version >= '3.6.1'",
             "version": "==2.6"
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@@ -233,6 +234,7 @@
                 "sha256:b80878c9f40111313e55da8ba20bdba06d8fa3969fc68304167741bbf9e082ed"
             ],
             "index": "pypi",
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             "version": "==4.12.3"
         },
         "billiard": {
@@ -273,11 +275,11 @@
         },
         "botocore": {
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-            "version": "==1.34.22"
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@@ -507,41 +509,41 @@
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-            "version": "==42.0.3"
+            "version": "==42.0.5"
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@@ -572,6 +574,7 @@
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             ],
             "index": "pypi",
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             "version": "==5.3.3"
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@@ -597,11 +600,12 @@
         },
         "django-debug-toolbar": {
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-            "version": "==4.2.0"
+            "markers": "python_version >= '3.8'",
+            "version": "==4.3.0"
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@@ -632,6 +636,7 @@
                 "sha256:9600b7562f79a92cbf1fde6403c04fee314608fefbb595502e34383ae8203401"
             ],
             "index": "pypi",
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         "django-iconify": {
@@ -681,11 +686,12 @@
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         "django-pydantic-field": {
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-            "version": "==0.3.0"
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         "django-rest-knox": {
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@@ -856,11 +862,11 @@
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@@ -923,7 +929,7 @@
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+            "markers": "python_version >= '3' and platform_machine == 'aarch64' or (platform_machine == 'ppc64le' or (platform_machine == 'x86_64' or (platform_machine == 'amd64' or (platform_machine == 'AMD64' or (platform_machine == 'win32' or platform_machine == 'WIN32')))))",
             "version": "==3.0.3"
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@@ -968,7 +974,6 @@
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@@ -1117,6 +1122,7 @@
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@@ -1202,83 +1208,99 @@
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-            "version": "==2.2.0"
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@@ -1473,11 +1497,12 @@
         },
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-            "version": "==3.9.0"
+            "markers": "python_version >= '3.8'",
+            "version": "==3.10.0"
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@@ -1513,6 +1538,7 @@
                 "sha256:f4c42102bc82a51108e449cbb32b19b180022941c727bac0cfd50170341f16ee"
             ],
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             "version": "==3.20.3"
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@@ -1720,6 +1746,7 @@
                 "sha256:fa7790e94c60f809c95602a26d906eba01a0abee9cc24150e4ce2189352deb1b"
             ],
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@@ -1769,6 +1796,7 @@
                 "sha256:f73d7923c89618fb7024875ed8eddc5fb0c911f430e3495de482fcee48143e45"
             ],
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             "version": "==0.22.0"
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@@ -1794,6 +1822,7 @@
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             ],
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             "version": "==1.0.1"
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@@ -1858,6 +1887,7 @@
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             ],
             "index": "pypi",
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             "version": "==6.0.1"
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@@ -2107,19 +2137,20 @@
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-                "sha256:b5ec07062481bbb45cb061b31984c7188d106e292c27033039e024e4ba5740dc"
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-            "version": "==2023.12.2"
+            "markers": "python_version >= '3.8'",
+            "version": "==2024.2.0"
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         "sentry-sdk": {
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-            "version": "==1.39.2"
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@@ -2231,6 +2262,7 @@
                 "sha256:ff836cd4041e16003549449cc0a5e372f6b6f871eb89007ab0ee18fb2800fded"
             ],
             "index": "pypi",
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             "version": "==3.19.2"
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@@ -2392,6 +2424,7 @@
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             ],
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             "version": "==1.4.51"
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@@ -2409,6 +2442,7 @@
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             ],
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             "version": "==0.10.2"
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@@ -2421,27 +2455,28 @@
         },
         "tqdm": {
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-            "version": "==4.66.1"
+            "markers": "python_version >= '3.7'",
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-            "markers": "python_version >= '3.8'",
-            "version": "==4.9.0"
+            "markers": "python_version < '3.11'",
+            "version": "==4.10.0"
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         "tzdata": {
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-            "version": "==2023.4"
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         "unidecode": {
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@@ -2452,11 +2487,12 @@
         },
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@@ -2578,15 +2614,17 @@
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-            "version": "==3.1.9"
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@@ -2707,39 +2745,45 @@
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@@ -2907,6 +2951,7 @@
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@@ -2931,6 +2976,7 @@
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@@ -2969,15 +3015,16 @@
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@@ -2992,6 +3039,7 @@
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             "markers": "python_version >= '3.7'",
-            "version": "==2.1.4"
+            "version": "==2.1.5"
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@@ -3175,6 +3229,7 @@
                 "sha256:f91456ead12ab3c6c2e9491cf33ba6d08357d802192379bb482f1033ade496f5"
             ],
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+            "markers": "python_version >= '3.6'",
             "version": "==3.1.2"
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@@ -3199,6 +3254,7 @@
                 "sha256:7fc905272cefa4f364c1a3429cbbe9c0f98b793988efb5bf90aac80f08db09b1"
             ],
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+            "markers": "python_version >= '3.7'",
             "version": "==0.9.0"
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@@ -3222,16 +3278,16 @@
                 "sha256:7236d1e080e4936be2dc3e326cec0af72acf9212a7e1d060210e70a47e253523",
                 "sha256:ee7d41123f3c9911050ea2c2dac107568dc43b2d3b0c7557a33212c398ead30f"
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-            "markers": "sys_platform != 'win32'",
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             "version": "==4.9.0"
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-            "version": "==4.1.0"
+            "version": "==4.2.0"
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@@ -3293,6 +3349,7 @@
                 "sha256:961d03dc3453ebbc59dbdea9e4e11c5651520a876d0f4db161e8674aae935da9"
             ],
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+            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==2.8.2"
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@@ -3301,7 +3358,8 @@
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             ],
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-            "version": "==2.31"
+            "markers": "python_version >= '3.7'",
+            "version": "==2.31.0"
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         "requests-mock": {
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@@ -3313,11 +3371,12 @@
         },
         "selenium": {
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-                "sha256:d43d6972e516855fb242ef9ce4ce759057b115070e702e7b1c1032fe7b38d87b"
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-            "version": "==4.17.2"
+            "markers": "python_version >= '3.8'",
+            "version": "==4.18.1"
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@@ -3332,7 +3391,7 @@
                 "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926",
                 "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"
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-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'",
+            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==1.16.0"
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@@ -3345,11 +3404,11 @@
         },
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-                "sha256:eecefdce1e5bbfb7ad2eeaabf7c1eeb404d7757c379bd1f7e5cce9d8bf425384"
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-            "version": "==1.3.0"
+            "version": "==1.3.1"
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@@ -3371,6 +3430,7 @@
                 "sha256:93622790a0a29e04f0346458face1e144dc4d32f493714c6c3dff82a4adb77e6"
             ],
             "index": "pypi",
+            "markers": "python_version >= '3.8'",
             "version": "==3.0.0"
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@@ -3415,11 +3475,11 @@
         },
         "typing-extensions": {
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-            "version": "==4.9.0"
+            "version": "==4.10.0"
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         "urllib3": {
             "hashes": [
@@ -3467,6 +3527,42 @@
             ],
             "version": "==1.1.0"
         },
+        "watchdog": {
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+            "markers": "python_version >= '3.8'",
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@@ -3480,6 +3576,7 @@
                 "sha256:90a285dc0e42ad56b34e696398b8122ee4c681833fb35b8334a095d82c56da10"
             ],
             "index": "pypi",
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             "version": "==3.0.1"
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@@ -3502,11 +3599,12 @@
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         "django": {
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-                "sha256:d48608d5f62f2c1e260986835db089fa3b79d6f58510881d316b8d88345ae6e1"
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             "index": "pypi",
-            "version": "==3.2.23"
+            "markers": "python_version >= '3.6'",
+            "version": "==3.2.24"
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@@ -3514,6 +3612,7 @@
                 "sha256:9ae2bf87f9b6367b6cfd94a0451896cbc728e5400ed81cbfbd58ce743c0909a2"
             ],
             "index": "pypi",
+            "markers": "python_version >= '3.8'",
             "version": "==4.6.0"
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@@ -3537,30 +3636,25 @@
                 "sha256:7edb0accec4e037797705f3a05cbf36a9fde50d08c8f67f2aef99a2628fab828"
             ],
             "index": "pypi",
+            "markers": "python_version >= '3.6'",
             "version": "==3.4.4"
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-        "pytz": {
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-                "sha256:ce42d816b81b68506614c11e8937d3aa9e41007ceb50bfdcb0749b921bf646c7"
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                 "sha256:d446183e84b8349fa3061f0fe7f06ca94ba65b426946ffebe6e3e8295332420c"
             ],
             "index": "pypi",
+            "markers": "python_version >= '3.5'",
             "version": "==0.4.4"
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         "typing-extensions": {
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-                "sha256:af72aea155e91adfc61c3ae9e0e342dbc0cba726d6cba4b6c72c1f34e47291cd"
+                "sha256:69b1a937c3a517342112fb4c6df7e72fc39a38e7891a5730ed4985b5214b5475",
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-            "version": "==4.9.0"
+            "version": "==4.10.0"
         }
     },
     "prod-packages": {
@@ -3582,34 +3676,36 @@
         },
         "boto3": {
             "hashes": [
-                "sha256:0491a65e55de999d07f42bb28ff6a38bad493934154b6304fcdfb4699a612d6c",
-                "sha256:881b07d0d55e5d85b62e6c965efcb2820bdfbd8f23a73a7bc9dac3a4997a1343"
+                "sha256:290952be7899560039cb0042e8a2354f61a7dead0d0ca8bea6ba901930df0468",
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             ],
             "index": "pypi",
-            "version": "==1.34.26"
+            "markers": "python_version >= '3.8'",
+            "version": "==1.34.50"
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         "botocore": {
             "hashes": [
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-                "sha256:e5f7775975b9213507fbcf846a96b7a2aec2a44fc12a44585197b014a4ab0889"
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             "markers": "python_version >= '3.8'",
-            "version": "==1.34.22"
+            "version": "==1.34.34"
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         "django": {
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-                "sha256:d48608d5f62f2c1e260986835db089fa3b79d6f58510881d316b8d88345ae6e1"
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             "index": "pypi",
-            "version": "==3.2.23"
+            "markers": "python_version >= '3.6'",
+            "version": "==3.2.24"
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                 "sha256:ebc88df7da810732e2af9987f7f426c96204bf89319df4c6da6ca9a2942edd5b"
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-            "index": "pypi",
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             "version": "==5.4.0"
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@@ -3618,53 +3714,56 @@
                 "sha256:51b36af28cc5813b98d5f3dfe7459af638d84428c8df4a03990c7d74d1bea4e5"
             ],
             "index": "pypi",
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             "version": "==1.14.2"
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+            "markers": "python_version >= '3.8'",
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@@ -3727,7 +3826,7 @@
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+            "markers": "python_version >= '3' and platform_machine == 'aarch64' or (platform_machine == 'ppc64le' or (platform_machine == 'x86_64' or (platform_machine == 'amd64' or (platform_machine == 'AMD64' or (platform_machine == 'win32' or platform_machine == 'WIN32')))))",
             "version": "==3.0.3"
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@@ -3736,6 +3835,7 @@
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@@ -3760,21 +3860,16 @@
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@@ -3798,7 +3893,7 @@
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@@ -3807,15 +3902,16 @@
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@@ -3831,6 +3927,7 @@
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+                "sha256:ede888382882f07b9e4cd942255921ffd9f2901684198b88e247c7eabd27a000",
+                "sha256:f444de0565db46d26c9fa931ca14f497900a295bd5eba480fc3fad25af8c763e",
+                "sha256:fa994e8937e8ccc7e87395b7b35092818905cf27c651e3ff3e7f29729f5ce3ce",
+                "sha256:febceb04ee7dd2aef08c2ff3d6f8a07de3052fc90137c507b0ede3ea80c21440"
             ],
             "markers": "python_version >= '3.7'",
-            "version": "==6.1"
+            "version": "==6.2"
         }
     }
 }
diff --git a/config/settings/base.py b/config/settings/base.py
index 4cb1ff0d3..2fac5e9e2 100644
--- a/config/settings/base.py
+++ b/config/settings/base.py
@@ -484,7 +484,7 @@
 SV_CLEANUP_BUILDING_SV_SETS = env.int("VARFISH_SV_CLEANUP_BUILDING_SV_SETS", 48)
 
 # Path to database for the worker (base database with sub entries for mehari etc.).
-WORKER_DB_PATH = env.str("VARFISH_WORKER_DB_PATH", "")
+WORKER_DB_PATH = env.str("VARFISH_WORKER_DB_PATH", "/data/varfish-static/data")
 
 # Path to executable for worker.
 WORKER_EXE_PATH = env.str("VARFISH_WORKER_EXE_PATH", "varfish-server-worker")
diff --git a/config/settings/local.py b/config/settings/local.py
index 064a02c86..8b39f7788 100644
--- a/config/settings/local.py
+++ b/config/settings/local.py
@@ -85,6 +85,11 @@
 # ------------------------------------------------------------------------------
 TEST_RUNNER = "snapshottest.django.TestRunner"
 
+# VarFish Worker
+# ------------------------------------------------------------------------------
+
+WORKER_DB_PATH = env.str("VARFISH_WORKER_DB_PATH", ".dev/volumes/varfish-static/data")
+
 # Your local stuff: Below this line define 3rd party library settings
 # ------------------------------------------------------------------------------
 
diff --git a/svs/migrations/0024_clear_sv_queries.py b/svs/migrations/0024_clear_sv_queries.py
new file mode 100644
index 000000000..8f5515ade
--- /dev/null
+++ b/svs/migrations/0024_clear_sv_queries.py
@@ -0,0 +1,16 @@
+# Generated by Django 3.2.24 on 2024-02-27 13:41
+
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+    dependencies = [
+        ("svs", "0023_int_to_bigint"),
+    ]
+
+    operations = [
+        migrations.RunSQL(
+            r"""TRUNCATE TABLE "svs_svquery" CASCADE""",
+            "",
+        )
+    ]
diff --git a/svs/models/jobs.py b/svs/models/jobs.py
index 3367b11b3..d7ad7bf74 100644
--- a/svs/models/jobs.py
+++ b/svs/models/jobs.py
@@ -7,6 +7,7 @@
 import subprocess
 from tempfile import TemporaryDirectory
 import traceback
+from typing import Dict, List
 import uuid
 import uuid as uuid_object
 
@@ -16,6 +17,7 @@
 from django.db import models, transaction
 from django.utils import timezone
 from projectroles.models import Project
+from pydantic import BaseModel
 from sqlalchemy import and_
 
 from svs.models.queries import SvQuery, SvQueryResultRow, SvQueryResultSet
@@ -91,6 +93,75 @@ def create_sv_query_bg_job(case, svquery, user):
         )
 
 
+class Contig(BaseModel):
+    """A genome contig."""
+
+    name: str
+    length: int
+
+
+CONTIGS_GRCH38: Dict[str, Contig] = {
+    "1": Contig(name="chr1", length=248956422),
+    "2": Contig(name="chr2", length=242193529),
+    "3": Contig(name="chr3", length=198295559),
+    "4": Contig(name="chr4", length=190214555),
+    "5": Contig(name="chr5", length=181538259),
+    "6": Contig(name="chr6", length=170805979),
+    "7": Contig(name="chr7", length=159345973),
+    "8": Contig(name="chr8", length=145138636),
+    "9": Contig(name="chr9", length=138394717),
+    "10": Contig(name="chr10", length=133797422),
+    "11": Contig(name="chr11", length=135086622),
+    "12": Contig(name="chr12", length=133275309),
+    "13": Contig(name="chr13", length=114364328),
+    "14": Contig(name="chr14", length=107043718),
+    "15": Contig(name="chr15", length=101991189),
+    "16": Contig(name="chr16", length=90338345),
+    "17": Contig(name="chr17", length=83257441),
+    "18": Contig(name="chr18", length=80373285),
+    "19": Contig(name="chr19", length=58617616),
+    "20": Contig(name="chr20", length=64444167),
+    "21": Contig(name="chr21", length=46709983),
+    "22": Contig(name="chr22", length=50818468),
+    "X": Contig(name="chrX", length=156040895),
+    "Y": Contig(name="chrY", length=57227415),
+    "M": Contig(name="chrM", length=16569),
+}
+
+CONTIGS_GRCH37: Dict[str, Contig] = {
+    "1": Contig(name="1", length=249250621),
+    "2": Contig(name="2", length=243199373),
+    "3": Contig(name="3", length=198022430),
+    "4": Contig(name="4", length=191154276),
+    "5": Contig(name="5", length=180915260),
+    "6": Contig(name="6", length=171115067),
+    "7": Contig(name="7", length=159138663),
+    "8": Contig(name="8", length=146364022),
+    "9": Contig(name="9", length=141213431),
+    "10": Contig(name="10", length=135534747),
+    "11": Contig(name="11", length=135006516),
+    "12": Contig(name="12", length=133851895),
+    "13": Contig(name="13", length=115169878),
+    "14": Contig(name="14", length=107349540),
+    "15": Contig(name="15", length=102531392),
+    "16": Contig(name="16", length=90354753),
+    "17": Contig(name="17", length=81195210),
+    "18": Contig(name="18", length=78077248),
+    "19": Contig(name="19", length=59128983),
+    "20": Contig(name="20", length=63025520),
+    "21": Contig(name="21", length=48129895),
+    "22": Contig(name="22", length=51304566),
+    "X": Contig(name="X", length=155270560),
+    "Y": Contig(name="Y", length=59373566),
+    "M": Contig(name="MT", length=16569),
+}
+
+CONTIGS: Dict[str, Dict[str, Contig]] = {
+    "GRCh37": CONTIGS_GRCH37,
+    "GRCh38": CONTIGS_GRCH38,
+}
+
+
 SV_RECORDS_HEADER = (
     "release",
     "chromosome",
@@ -109,6 +180,100 @@ def create_sv_query_bg_job(case, svquery, user):
 )
 
 
+def _write_header(outputf, case, callers):
+    """Write out header to to the given output file for the given release."""
+    worker_version = (
+        subprocess.check_output([settings.WORKER_EXE_PATH, "--version"])
+        .decode("utf-8")
+        .split()[-1]
+        .strip()
+    )
+    print(worker_version)
+
+    sample_lines = []
+    for entry in case.pedigree:
+        sex = {
+            1: "Male",
+            2: "Female",
+        }.get("sex", "Unknown")
+        disease = {
+            1: "Unaffected",
+            2: "Affected",
+        }.get("disease", "Unknown")
+        sample_lines.append(f"##SAMPLE=<ID={entry['patient']},Sex={sex},Disease={disease}>")
+
+    pedigree_lines = []
+    for entry in case.pedigree:
+        if entry.get("father", "0") != "0":
+            father = f",Father={entry['father']}"
+        else:
+            father = ""
+        if entry.get("mother", "0") != "0":
+            mother = f",Mother={entry['mother']}"
+        else:
+            mother = ""
+        pedigree_lines.append(f"##PEDIGREE=<ID={entry['patient']}{father}{mother}>")
+
+    caller_lines = []
+    for caller in callers:
+        name, version = caller.split("v")
+        caller_lines.append(
+            f'##x-varfish-version=<ID=orig-caller-{name},Name="{name}",Version="{version}">'
+        )
+
+    print(
+        "\n".join(
+            [
+                "##fileformat=VCFv4.4",
+                "##fileDate=%s" % datetime.today().strftime("%Y%m%d"),
+                '##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">',
+                '##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the longest variant described in this record">',
+                '##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">',
+                '##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">',
+                '##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ for abundance, adjacency and both respectively">',
+                '##INFO=<ID=callers,Number=.,Type=String,Description="Callers that called the variant">',
+                '##INFO=<ID=chr2,Number=1,Type=String,Description="Second chromosome, if not equal to CHROM">',
+                "##INFO=<ID=annsv,Number=1,Type=String,Description=\"Effect annotations: 'Allele | Annotation | Gene_Name | Gene_ID'\">",
+                '##FILTER=<ID=PASS,Description="All filters passed">',
+                '##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">',
+                '##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">',
+                '##FORMAT=<ID=pec,Number=1,Type=Integer,Description="Total coverage with paired-end reads">',
+                '##FORMAT=<ID=pev,Number=1,Type=Integer,Description="Paired-end reads supporting the variant">',
+                '##FORMAT=<ID=src,Number=1,Type=Integer,Description="Total coverage with split reads">',
+                '##FORMAT=<ID=srv,Number=1,Type=Integer,Description="Split reads supporting the variant">',
+                '##FORMAT=<ID=amq,Number=1,Type=Float,Description="Average mapping quality over the variant">',
+                '##FORMAT=<ID=cn,Number=1,Type=Integer,Description="Copy number of the variant in the sample">',
+                '##FORMAT=<ID=anc,Number=1,Type=Float,Description="Average normalized coverage over the variant in the sample">',
+                '##FORMAT=<ID=pc,Number=1,Type=Integer,Description="Point count (windows/targets/probes)">',
+                '##ALT=<ID=DEL,Description="Deletion">',
+                '##ALT=<ID=DUP,Description="Duplication">',
+                '##ALT=<ID=INS,Description="Insertion">',
+                '##ALT=<ID=CNV,Description="Copy Number Variation">',
+                '##ALT=<ID=INV,Description="Inversion">',
+            ]
+            + [
+                f'##contig=<ID={contig.name},length={contig.length},assembly="{case.release}",species="Homo sapiens">'
+                for contig in CONTIGS[case.release].values()
+            ]
+            + sample_lines
+            + pedigree_lines
+            + [
+                f"##x-varfish-genome-build={case.release}",
+                f"##x-varfish-case-uuid={case.sodar_uuid}",
+                f'##x-varfish-version=<ID=varfish-server-worker,Version="{worker_version}">',
+            ]
+            + caller_lines
+            + [
+                "\t".join(
+                    ["#CHROM", "POS", "ID", "REF", "ALT", "QUAL", "FILTER", "INFO", "FORMAT"]
+                    + [member["patient"] for member in case.pedigree]
+                )
+            ]
+        ),
+        file=outputf,
+    )
+
+
 def run_sv_query_bg_job(pk):
     """Execute a query for SVs."""
     filter_job = FilterSvBgJob.objects.select_related("case", "svquery").get(id=pk)
@@ -149,41 +314,103 @@ def _inner(tmpdir):
         """Actual implementation moved into function so we can easily wrap this into try/catch"""
         filter_job.add_log_entry("Starting SV database query")
 
-        #: Dump the SVs to a TSV file for processing by the worker
+        # Mapping of key from database JSON keys to VCF format keys.
+        format_db_to_vcf = {
+            "gq": "GQ",
+            "gt": "GT",
+            "pec": "pec",
+            "pev": "pev",
+            "src": "src",
+            "srv": "srv",
+            "amq": "amq",
+            "cn": "cn",
+            "anc": "anc",
+            "pc": "pc",
+        }
+
+        # Dump the SVs to a TSV file for processing by the worker
         filter_job.add_log_entry("Dumping SVs and query to temporary files ...")
         with open(os.path.join(tmpdir, "query.json"), "wt") as outputf:
-            # Replace empty value strings by None, works around issue with "" rather
-            # than numbers.
+            # Replace empty value strings by None, works around issue with empty string
+            # rather than numbers.
             query_settings = {
                 key: None if value == "" else value
                 for key, value in query_model.query_settings.items()
             }
             print(json.dumps(query_settings), file=outputf)
-        with open(os.path.join(tmpdir, "input.tsv"), "wt") as outputf:
-            print(
-                "\t".join(SV_RECORDS_HEADER),
-                file=outputf,
-            )
+
+        samples = [member["patient"] for member in filter_job.case.pedigree]
+
+        with open(os.path.join(tmpdir, "input.vcf"), "wt") as outputf:
             case_id = filter_job.case.id
             variant_set_id = filter_job.case.latest_structural_variant_set_id
-            for record in StructuralVariant.objects.filter(case_id=case_id, set_id=variant_set_id):
-                arr = (
-                    record.release,
+            records = StructuralVariant.objects.filter(case_id=case_id, set_id=variant_set_id)
+            callers = set()
+            for record in records:
+                for caller in record.caller.split(";"):
+                    callers.add(caller)
+
+            _write_header(outputf, filter_job.case, list(sorted(callers)))
+            for record in records:
+                keys_in_row = set()
+                for gt in record.genotype.values():
+                    keys_in_row.update(gt.keys())
+                keys_in_row = ["gt"] + [
+                    x for x in sorted(keys_in_row & set(format_db_to_vcf.keys())) if x != "gt"
+                ]
+
+                info = f"SVTYPE={record.sv_type};END={record.end};callers={record.caller.replace(';', ',')}"
+                if record.sv_type == "DEL":
+                    info = f"{info};SVLEN={record.end - record.start};SVCLAIM=DJ"
+                    alt = "<DEL>"
+                elif record.sv_type == "DUP":
+                    info = f"{info};SVLEN={record.end - record.start};SVCLAIM=DJ"
+                    alt = "<DUP>"
+                elif record.sv_type == "INV":
+                    info = f"{info};SVLEN={record.end - record.start};SVCLAIM=J"
+                    alt = "<INV>"
+                elif record.sv_type == "INS":
+                    info = f"{info};SVLEN={record.end - record.start};SVCLAIM=J"
+                    alt = "<INS>"
+                elif record.sv_type == "CNV":
+                    info = f"{info};SVLEN={record.end - record.start};SVCLAIM=D"
+                    alt = "<CNV>"
+                elif record.sv_type == "BND":
+                    info = f"{info};chr2={record.chromosome2};SVCLAIM=J"
+                    pe_orientation = record.pe_orientation or "NtoN"
+                    if pe_orientation == "3to3":
+                        alt = f"[{record.chromosome2}:{record.end}[N"
+                    elif pe_orientation == "5to5":
+                        alt = f"N]{record.chromosome2}:{record.end}]"
+                    elif pe_orientation == "3to5" or pe_orientation == "NtoN":
+                        alt = f"]{record.chromosome2}:{record.end}]N"
+                    elif pe_orientation == "5to3":
+                        alt = f"N[{record.chromosome2}:{record.end}["
+                    else:
+                        raise ValueError(f"Unexpected PE orientation: {pe_orientation}")
+                else:
+                    raise ValueError(f"Unexpected SV type: {record.sv_type}")
+
+                arr = [
                     record.chromosome,
-                    str(record.chromosome_no),
-                    str(record.bin),
-                    str(record.start),
-                    record.caller,
-                    record.sv_type,
-                    record.sv_sub_type or record.sv_type,
-                    record.chromosome2 or record.chromosome,
-                    str(record.chromosome_no2 or record.chromosome_no),
-                    str(record.bin2 or record.bin),
-                    str(record.end),
-                    record.pe_orientation or "NtoN",
-                    json.dumps(record.genotype),
-                )
-                print("\t".join(arr), file=outputf)
+                    record.start,
+                    ".",
+                    "N",
+                    alt,
+                    ".",
+                    ".",
+                    info,
+                    ":".join([format_db_to_vcf[key] for key in keys_in_row]),
+                ] + [
+                    ":".join([str(record.genotype[sample].get(key, ".")) for key in keys_in_row])
+                    for sample in samples
+                ]
+                print("\t".join(map(str, arr)), file=outputf)
+        with open(os.path.join(tmpdir, "input.vcf"), "rt") as inputf:
+            data = inputf.read()
+            print(data)
+            with open("/tmp/x.vcf", "wt") as outputf:
+                outputf.write(data)
         filter_job.add_log_entry("... done dumping the SVs and query")
 
         #: Actually run the worker
@@ -191,15 +418,16 @@ def _inner(tmpdir):
         start_time = timezone.now()
         cmd = [
             settings.WORKER_EXE_PATH,
-            "sv",
+            "-vvv",
+            "strucvars",
             "query",
             "--path-db",
             settings.WORKER_DB_PATH,
             "--path-query-json",
             os.path.join(tmpdir, "query.json"),
-            "--path-input-svs",
-            os.path.join(tmpdir, "input.tsv"),
-            "--path-output-svs",
+            "--path-input",
+            os.path.join(tmpdir, "input.vcf"),
+            "--path-output",
             os.path.join(tmpdir, "output.tsv"),
             "--genome-release",
             filter_job.case.release.lower(),
diff --git a/svs/query_presets.py b/svs/query_presets.py
index 9580f38ce..f1597f096 100644
--- a/svs/query_presets.py
+++ b/svs/query_presets.py
@@ -119,12 +119,12 @@ class _FrequencyPresets:
         "svdb_dgv_gs_enabled": True,
         "svdb_dgv_gs_min_overlap": 0.75,
         "svdb_dgv_gs_max_count": None,
-        "svdb_gnomad_enabled": True,
-        "svdb_gnomad_min_overlap": 0.75,
-        "svdb_gnomad_max_count": 10,
-        "svdb_exac_enabled": True,
-        "svdb_exac_min_overlap": 0.75,
-        "svdb_exac_max_count": None,
+        "svdb_gnomad_genomes_enabled": True,
+        "svdb_gnomad_genomes_min_overlap": 0.75,
+        "svdb_gnomad_genomes_max_count": 10,
+        "svdb_gnomad_exomes_enabled": True,
+        "svdb_gnomad_exomes_min_overlap": 0.75,
+        "svdb_gnomad_exomes_max_count": None,
         "svdb_dbvar_enabled": True,
         "svdb_dbvar_min_overlap": 0.75,
         "svdb_dbvar_max_count": None,
@@ -143,12 +143,12 @@ class _FrequencyPresets:
         "svdb_dgv_gs_enabled": True,
         "svdb_dgv_gs_min_overlap": 0.75,
         "svdb_dgv_gs_max_count": None,
-        "svdb_gnomad_enabled": True,
-        "svdb_gnomad_min_overlap": 0.75,
-        "svdb_gnomad_max_count": 20,
-        "svdb_exac_enabled": True,
-        "svdb_exac_min_overlap": 0.75,
-        "svdb_exac_max_count": None,
+        "svdb_gnomad_genomes_enabled": True,
+        "svdb_gnomad_genomes_min_overlap": 0.75,
+        "svdb_gnomad_genomes_max_count": 20,
+        "svdb_gnomad_exomes_enabled": True,
+        "svdb_gnomad_exomes_min_overlap": 0.75,
+        "svdb_gnomad_exomes_max_count": None,
         "svdb_dbvar_enabled": True,
         "svdb_dbvar_min_overlap": 0.75,
         "svdb_dbvar_max_count": None,
@@ -167,12 +167,12 @@ class _FrequencyPresets:
         "svdb_dgv_gs_enabled": True,
         "svdb_dgv_gs_min_overlap": 0.75,
         "svdb_dgv_gs_max_count": None,
-        "svdb_gnomad_enabled": True,
-        "svdb_gnomad_min_overlap": 0.75,
-        "svdb_gnomad_max_count": None,
-        "svdb_exac_enabled": True,
-        "svdb_exac_min_overlap": 0.75,
-        "svdb_exac_max_count": None,
+        "svdb_gnomad_genomes_enabled": True,
+        "svdb_gnomad_genomes_min_overlap": 0.75,
+        "svdb_gnomad_genomes_max_count": None,
+        "svdb_gnomad_exomes_enabled": True,
+        "svdb_gnomad_exomes_min_overlap": 0.75,
+        "svdb_gnomad_exomes_max_count": None,
         "svdb_dbvar_enabled": True,
         "svdb_dbvar_min_overlap": 0.75,
         "svdb_dbvar_max_count": None,
diff --git a/svs/query_schemas.py b/svs/query_schemas.py
index 9f3650e65..2d175f23a 100644
--- a/svs/query_schemas.py
+++ b/svs/query_schemas.py
@@ -312,17 +312,17 @@ class CaseQuery:
     #: The maximal number of carriers for querying DGV gold standard.
     svdb_dgv_gs_max_count: typing.Optional[int] = None
     #: Whether to enable SVDB overlap queries with gnomAD.
-    svdb_gnomad_enabled: bool = True
+    svdb_gnomad_genomes_enabled: bool = True
     #: The minimal reciprocal overlap for querying gnomAD.
-    svdb_gnomad_min_overlap: typing.Optional[float] = 0.75
+    svdb_gnomad_genomes_min_overlap: typing.Optional[float] = 0.75
     #: The maximal number of carriers for querying gnomAD.
-    svdb_gnomad_max_count: typing.Optional[int] = 20
+    svdb_gnomad_genomes_max_count: typing.Optional[int] = 20
     #: Whether to enable SVDB overlap queries with ExAC.
-    svdb_exac_enabled: bool = True
+    svdb_gnomad_exomes_enabled: bool = True
     #: The minimal reciprocal overlap for querying ExAC.
-    svdb_exac_min_overlap: typing.Optional[float] = 0.75
+    svdb_gnomad_exomes_min_overlap: typing.Optional[float] = 0.75
     #: The maximal number of carriers for querying ExAC.
-    svdb_exac_max_count: typing.Optional[int] = 20
+    svdb_gnomad_exomes_max_count: typing.Optional[int] = 20
     #: Whether to enable SVDB overlap queries with dbVar.
     svdb_dbvar_enabled: bool = True
     #: The minimal reciprocal overlap for querying dbVar.
diff --git a/svs/tests/snapshots/snap_test_query_presets.py b/svs/tests/snapshots/snap_test_query_presets.py
index 642216b2c..e6c9e1385 100644
--- a/svs/tests/snapshots/snap_test_query_presets.py
+++ b/svs/tests/snapshots/snap_test_query_presets.py
@@ -59,15 +59,15 @@
     "svdb_dgv_gs_min_overlap": 0.75,
     "svdb_dgv_max_count": None,
     "svdb_dgv_min_overlap": 0.75,
-    "svdb_exac_enabled": True,
-    "svdb_exac_max_count": None,
-    "svdb_exac_min_overlap": 0.75,
+    "svdb_gnomad_exomes_enabled": True,
+    "svdb_gnomad_exomes_max_count": None,
+    "svdb_gnomad_exomes_min_overlap": 0.75,
     "svdb_g1k_enabled": True,
     "svdb_g1k_max_count": None,
     "svdb_g1k_min_overlap": 0.75,
-    "svdb_gnomad_enabled": True,
-    "svdb_gnomad_max_count": None,
-    "svdb_gnomad_min_overlap": 0.75,
+    "svdb_gnomad_genomes_enabled": True,
+    "svdb_gnomad_genomes_max_count": None,
+    "svdb_gnomad_genomes_min_overlap": 0.75,
     "svdb_inhouse_enabled": True,
     "svdb_inhouse_max_count": None,
     "svdb_inhouse_min_overlap": 0.75,
@@ -83,15 +83,15 @@
     "svdb_dgv_gs_min_overlap": 0.75,
     "svdb_dgv_max_count": None,
     "svdb_dgv_min_overlap": 0.75,
-    "svdb_exac_enabled": True,
-    "svdb_exac_max_count": None,
-    "svdb_exac_min_overlap": 0.75,
+    "svdb_gnomad_exomes_enabled": True,
+    "svdb_gnomad_exomes_max_count": None,
+    "svdb_gnomad_exomes_min_overlap": 0.75,
     "svdb_g1k_enabled": True,
     "svdb_g1k_max_count": None,
     "svdb_g1k_min_overlap": 0.75,
-    "svdb_gnomad_enabled": True,
-    "svdb_gnomad_max_count": 20,
-    "svdb_gnomad_min_overlap": 0.75,
+    "svdb_gnomad_genomes_enabled": True,
+    "svdb_gnomad_genomes_max_count": 20,
+    "svdb_gnomad_genomes_min_overlap": 0.75,
     "svdb_inhouse_enabled": True,
     "svdb_inhouse_max_count": 30,
     "svdb_inhouse_min_overlap": 0.75,
@@ -107,15 +107,15 @@
     "svdb_dgv_gs_min_overlap": 0.75,
     "svdb_dgv_max_count": None,
     "svdb_dgv_min_overlap": 0.75,
-    "svdb_exac_enabled": True,
-    "svdb_exac_max_count": None,
-    "svdb_exac_min_overlap": 0.75,
+    "svdb_gnomad_exomes_enabled": True,
+    "svdb_gnomad_exomes_max_count": None,
+    "svdb_gnomad_exomes_min_overlap": 0.75,
     "svdb_g1k_enabled": True,
     "svdb_g1k_max_count": None,
     "svdb_g1k_min_overlap": 0.75,
-    "svdb_gnomad_enabled": True,
-    "svdb_gnomad_max_count": 10,
-    "svdb_gnomad_min_overlap": 0.75,
+    "svdb_gnomad_genomes_enabled": True,
+    "svdb_gnomad_genomes_max_count": 10,
+    "svdb_gnomad_genomes_min_overlap": 0.75,
     "svdb_inhouse_enabled": True,
     "svdb_inhouse_max_count": 5,
     "svdb_inhouse_min_overlap": 0.75,
@@ -277,15 +277,15 @@
     "svdb_dgv_gs_min_overlap": 0.75,
     "svdb_dgv_max_count": None,
     "svdb_dgv_min_overlap": 0.75,
-    "svdb_exac_enabled": True,
-    "svdb_exac_max_count": None,
-    "svdb_exac_min_overlap": 0.75,
+    "svdb_gnomad_exomes_enabled": True,
+    "svdb_gnomad_exomes_max_count": None,
+    "svdb_gnomad_exomes_min_overlap": 0.75,
     "svdb_g1k_enabled": True,
     "svdb_g1k_max_count": None,
     "svdb_g1k_min_overlap": 0.75,
-    "svdb_gnomad_enabled": True,
-    "svdb_gnomad_max_count": 10,
-    "svdb_gnomad_min_overlap": 0.75,
+    "svdb_gnomad_genomes_enabled": True,
+    "svdb_gnomad_genomes_max_count": 10,
+    "svdb_gnomad_genomes_min_overlap": 0.75,
     "svdb_inhouse_enabled": True,
     "svdb_inhouse_max_count": 5,
     "svdb_inhouse_min_overlap": 0.75,
diff --git a/svs/views/ajax/queries.py b/svs/views/ajax/queries.py
index fc56dfc6a..9b5f00d06 100644
--- a/svs/views/ajax/queries.py
+++ b/svs/views/ajax/queries.py
@@ -196,7 +196,7 @@ class SvQueryResultRowListAjaxView(ListAPIView):
     serializer_class = SvQueryResultRowSerializer
 
     def get_queryset(self):
-        bgdbs = ("dbvar", "dgv", "dgv_gs", "exac", "g1k", "gnomad", "inhouse")
+        bgdbs = ("dbvar", "dgv", "dgv_gs", "g1k", "gnomad_exomes", "gnomad_genomes", "inhouse")
 
         order_by_str = self.request.query_params.get("order_by", "chromosome_no,start")
         order_dir = self.request.query_params.get("order_dir", "asc")
diff --git a/svs/vueapp/src/components/SvFilterForm/FrequencyPane.vue b/svs/vueapp/src/components/SvFilterForm/FrequencyPane.vue
index 0bc81de37..b29ecb88a 100644
--- a/svs/vueapp/src/components/SvFilterForm/FrequencyPane.vue
+++ b/svs/vueapp/src/components/SvFilterForm/FrequencyPane.vue
@@ -19,9 +19,9 @@ const dumpFrequencies = () => {
       key.startsWith('svdb_g1k_') ||
       key.startsWith('svdb_dgv_') ||
       key.startsWith('svdb_dgv_gs_') ||
-      key.startsWith('svdb_exac_') ||
+      key.startsWith('svdb_gnomad_exomes_') ||
       key.startsWith('svdb_dbvar_') ||
-      key.startsWith('svdb_gnomad_') ||
+      key.startsWith('svdb_gnomad_genomes_') ||
       key.startsWith('svdb_inhouse_')
     ) {
       result[key] = value
@@ -52,9 +52,9 @@ const rules = {
   ...makeRule('svdb_g1k'),
   ...makeRule('svdb_dgv'),
   ...makeRule('svdb_dgv_gs'),
-  ...makeRule('svdb_exac'),
+  ...makeRule('svdb_gnomad_exomes'),
   ...makeRule('svdb_dbvar'),
-  ...makeRule('svdb_gnomad'),
+  ...makeRule('svdb_gnomad_genomes'),
   ...makeRule('svdb_inhouse'),
 }
 
@@ -85,12 +85,12 @@ const formState = {
     'svdb_dgv_max_count',
     'svdb_dgv_gs_min_overlap',
     'svdb_dgv_gs_max_count',
-    'svdb_exac_min_overlap',
-    'svdb_exac_max_count',
+    'svdb_gnomad_exomes_min_overlap',
+    'svdb_gnomad_exomes_max_count',
     'svdb_dbvar_min_overlap',
     'svdb_dbvar_max_count',
-    'svdb_gnomad_min_overlap',
-    'svdb_gnomad_max_count',
+    'svdb_gnomad_genomes_min_overlap',
+    'svdb_gnomad_genomes_max_count',
     'svdb_inhouse_min_overlap',
     'svdb_inhouse_max_count',
   ]),
@@ -201,7 +201,7 @@ defineExpose({
       <tr v-show="props.case.release === 'GRCh37'">
         <td>
           <input
-            v-model="props.querySettings.svdb_exac_enabled"
+            v-model="props.querySettings.svdb_gnomad_exomes_enabled"
             type="checkbox"
           />
         </td>
@@ -210,16 +210,16 @@ defineExpose({
         </td>
         <td>
           <input
-            v-model.trim.lazy="v$.svdb_exac_min_overlap.$model"
+            v-model.trim.lazy="v$.svdb_gnomad_exomes_min_overlap.$model"
             type="text"
             placeholder="Min. SV Overlap with ExAC"
             class="form-control"
             :class="{
-              'is-invalid': v$.svdb_exac_min_overlap.$error,
+              'is-invalid': v$.svdb_gnomad_exomes_min_overlap.$error,
             }"
           />
           <div
-            v-for="error of v$.svdb_exac_min_overlap.$errors"
+            v-for="error of v$.svdb_gnomad_exomes_min_overlap.$errors"
             :key="error.$uid"
             class="invalid-feedback"
           >
@@ -228,16 +228,16 @@ defineExpose({
         </td>
         <td>
           <input
-            v-model.trim.lazy="v$.svdb_exac_max_count.$model"
+            v-model.trim.lazy="v$.svdb_gnomad_exomes_max_count.$model"
             type="text"
             placeholder="Maximal number of carriers in ExAC"
             class="form-control"
             :class="{
-              'is-invalid': v$.svdb_exac_max_count.$error,
+              'is-invalid': v$.svdb_gnomad_exomes_max_count.$error,
             }"
           />
           <div
-            v-for="error of v$.svdb_exac_max_count.$errors"
+            v-for="error of v$.svdb_gnomad_exomes_max_count.$errors"
             :key="error.$uid"
             class="invalid-feedback"
           >
@@ -248,7 +248,7 @@ defineExpose({
       <tr>
         <td>
           <input
-            v-model="props.querySettings.svdb_gnomad_enabled"
+            v-model="props.querySettings.svdb_gnomad_genomes_enabled"
             type="checkbox"
           />
         </td>
@@ -257,16 +257,16 @@ defineExpose({
         </td>
         <td>
           <input
-            v-model.trim.lazy="v$.svdb_gnomad_min_overlap.$model"
+            v-model.trim.lazy="v$.svdb_gnomad_genomes_min_overlap.$model"
             type="text"
             placeholder="Min. SV overlap with gnomAD-SV"
             class="form-control"
             :class="{
-              'is-invalid': v$.svdb_gnomad_min_overlap.$error,
+              'is-invalid': v$.svdb_gnomad_genomes_min_overlap.$error,
             }"
           />
           <div
-            v-for="error of v$.svdb_gnomad_min_overlap.$errors"
+            v-for="error of v$.svdb_gnomad_genomes_min_overlap.$errors"
             :key="error.$uid"
             class="invalid-feedback"
           >
@@ -275,16 +275,16 @@ defineExpose({
         </td>
         <td>
           <input
-            v-model.trim.lazy="v$.svdb_gnomad_max_count.$model"
+            v-model.trim.lazy="v$.svdb_gnomad_genomes_max_count.$model"
             type="text"
             placeholder="Maximal number of carriers in gnomAD-SV"
             class="form-control"
             :class="{
-              'is-invalid': v$.svdb_gnomad_max_count.$error,
+              'is-invalid': v$.svdb_gnomad_genomes_max_count.$error,
             }"
           />
           <div
-            v-for="error of v$.svdb_gnomad_max_count.$errors"
+            v-for="error of v$.svdb_gnomad_genomes_max_count.$errors"
             :key="error.$uid"
             class="invalid-feedback"
           >
diff --git a/svs/vueapp/src/components/SvFilterResultsTable.vue b/svs/vueapp/src/components/SvFilterResultsTable.vue
index 72a6b8a3f..a7c01496e 100644
--- a/svs/vueapp/src/components/SvFilterResultsTable.vue
+++ b/svs/vueapp/src/components/SvFilterResultsTable.vue
@@ -49,8 +49,14 @@ const tableHeaders = computed(() => {
       sortable: true,
     },
     {
-      text: 'gnomAD frequency',
-      value: 'payload.overlap_counts.gnomad',
+      text: 'gnomAD exomes',
+      value: 'payload.overlap_counts.gnomad_exomes',
+      width: 50,
+      sortable: true,
+    },
+    {
+      text: 'gnomAD genomes',
+      value: 'payload.overlap_counts.gnomad_genomes',
       width: 50,
       sortable: true,
     },
@@ -500,7 +506,7 @@ watch(
             ovl_disease_gene,
             tad_disease_gene,
             tx_effects,
-            clinvar_ovl_vcvs,
+            clinvar_ovl_rcvs,
             known_pathogenic,
           },
         }"
@@ -634,14 +640,14 @@ watch(
         <span
           class="text-nowrap"
           :class="{
-            'text-danger': payload.clinvar_ovl_vcvs.length,
+            'text-danger': payload.clinvar_ovl_rcvs.length,
             // || payload.known_pathogenic.length
           }"
         >
           {{ sv_type }}
-          <template v-if="payload.clinvar_ovl_vcvs.length">
+          <template v-if="payload.clinvar_ovl_rcvs.length">
             <span
-              :title="`Overlapping ClinVar SVs: ${payload.clinvar_ovl_vcvs}`"
+              :title="`Overlapping ClinVar SVs: ${payload.clinvar_ovl_rcvs}`"
               class="text-danger"
             >
               <i-mdi-hospital-building />
@@ -681,9 +687,14 @@ watch(
           {{ formatLargeInt(payload.overlap_counts.g1k) }}
         </div>
       </template>
-      <template #item-payload.overlap_counts.gnomad="{ payload }">
+      <template #item-payload.overlap_counts.gnomad_exomes="{ payload }">
+        <div class="text-right text-nowrap space">
+          {{ formatLargeInt(payload.overlap_counts.gnomad_exomes) }}
+        </div>
+      </template>
+      <template #item-payload.overlap_counts.gnomad_genomes="{ payload }">
         <div class="text-right text-nowrap space">
-          {{ formatLargeInt(payload.overlap_counts.gnomad) }}
+          {{ formatLargeInt(payload.overlap_counts.gnomad_exomes) }}
         </div>
       </template>
       <template #item-payload.overlap_counts.dgv="{ payload }">
diff --git a/utils/docker/Dockerfile b/utils/docker/Dockerfile
index b17e9fcff..c1c144d4b 100644
--- a/utils/docker/Dockerfile
+++ b/utils/docker/Dockerfile
@@ -137,17 +137,6 @@ RUN apt-get install -y libsqlite3-dev
 ADD https://github.com/ufoscout/docker-compose-wait/releases/download/2.7.3/wait /usr/local/bin/wait
 RUN chmod +x /usr/local/bin/wait
 
-# Install conda environment with varfish-server-worker if configured to do so.
-RUN ["/bin/bash","-c", "cd /tmp && \
-        wget https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh && \
-        bash Mambaforge-Linux-x86_64.sh -b -p /opt/miniconda3 && \
-        source /opt/miniconda3/bin/activate && \
-        conda install -c conda-forge -y mamba && \
-        mamba create -c conda-forge -c bioconda -y \
-            -n varfish-server \
-            varfish-server-worker==0.10.2 && \
-        rm -f Mambaforge-Linux-x86_64.sh"]
-
 # Copy the worker from the dedicated worker build.
 COPY --from=ghcr.io/varfish-org/varfish-server-worker:main /usr/local/bin/varfish-server-worker /usr/local/bin/varfish-server-worker