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feat: implement "seqvars query" command (#201) #223

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merged 59 commits into from
Oct 19, 2023

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@holtgrewe holtgrewe linked an issue Oct 11, 2023 that may be closed by this pull request
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codecov bot commented Oct 11, 2023

Codecov Report

Attention: 199 lines in your changes are missing coverage. Please review.

Comparison is base (28663b6) 78.61% compared to head (269a80f) 81.36%.
Report is 6 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #223      +/-   ##
==========================================
+ Coverage   78.61%   81.36%   +2.74%     
==========================================
  Files          27       42      +15     
  Lines        4158     5795    +1637     
==========================================
+ Hits         3269     4715    +1446     
- Misses        889     1080     +191     
Files Coverage Δ
src/common.rs 83.21% <ø> (ø)
src/seqvars/query/output/call_related.rs 100.00% <100.00%> (ø)
src/strucvars/ingest/mod.rs 90.83% <100.00%> (ø)
src/strucvars/query/interpreter.rs 94.71% <ø> (ø)
src/strucvars/query/schema.rs 76.55% <100.00%> (ø)
src/strucvars/txt_to_bin/clinvar/input.rs 85.00% <ø> (ø)
src/seqvars/aggregate/mod.rs 23.92% <0.00%> (-0.15%) ⬇️
src/seqvars/query/interpreter/genes_allowlist.rs 96.55% <96.55%> (ø)
src/main.rs 0.00% <0.00%> (ø)
src/seqvars/query/interpreter/frequency.rs 98.63% <98.63%> (ø)
... and 15 more

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@holtgrewe holtgrewe force-pushed the 201-implement-seqvars-query-command branch from 61d9082 to debb4a4 Compare October 11, 2023 13:31
@holtgrewe holtgrewe force-pushed the 201-implement-seqvars-query-command branch from debb4a4 to 90da8cc Compare October 12, 2023 05:47
@holtgrewe holtgrewe marked this pull request as ready for review October 19, 2023 08:20
@holtgrewe holtgrewe enabled auto-merge (squash) October 19, 2023 08:20
@holtgrewe holtgrewe merged commit a7cb0bd into main Oct 19, 2023
6 checks passed
@holtgrewe holtgrewe deleted the 201-implement-seqvars-query-command branch October 19, 2023 08:36
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Implement "seqvars query" command
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