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feat: implement "strucvars ingest" command (#200) #208

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merged 13 commits into from
Oct 9, 2023

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@holtgrewe holtgrewe linked an issue Oct 6, 2023 that may be closed by this pull request
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codecov bot commented Oct 6, 2023

Codecov Report

Attention: 79 lines in your changes are missing coverage. Please review.

Comparison is base (21b965c) 60.84% compared to head (b217519) 64.10%.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #208      +/-   ##
==========================================
+ Coverage   60.84%   64.10%   +3.26%     
==========================================
  Files          26       28       +2     
  Lines        3210     3683     +473     
==========================================
+ Hits         1953     2361     +408     
- Misses       1257     1322      +65     
Files Coverage Δ
src/db/mk_inhouse/cli.rs 89.41% <ø> (ø)
src/db/mk_inhouse/input.rs 88.88% <ø> (ø)
src/db/mk_inhouse/output.rs 96.55% <ø> (ø)
src/db/to_bin/clinvar/input.rs 85.00% <ø> (ø)
src/db/to_bin/clinvar/mod.rs 78.87% <100.00%> (ø)
src/db/to_bin/gene_region.rs 75.75% <ø> (ø)
src/db/to_bin/masked.rs 75.00% <ø> (ø)
src/db/to_bin/vardbs/input.rs 84.00% <ø> (ø)
src/db/to_bin/vardbs/mod.rs 81.81% <ø> (ø)
src/db/to_bin/xlink.rs 84.37% <ø> (ø)
... and 16 more

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@holtgrewe holtgrewe marked this pull request as ready for review October 9, 2023 11:58
@holtgrewe holtgrewe merged commit a783ef3 into main Oct 9, 2023
8 checks passed
@holtgrewe holtgrewe deleted the 200-implement-strucvars-ingest-command branch October 9, 2023 11:58
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Implement "strucvars ingest" command
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