diff --git a/Cargo.lock b/Cargo.lock
index 1853caba..9a5384b2 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -1456,6 +1456,12 @@ version = "2.1.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "9a3a5bfb195931eeb336b2a7b4d761daec841b97f947d34394601737a7bba5e4"
 
+[[package]]
+name = "hxdmp"
+version = "0.2.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "a17b27f28a7466846baca75f0a5244e546e44178eb7f1c07a3820f413e91c6b0"
+
 [[package]]
 name = "iana-time-zone"
 version = "0.1.57"
@@ -3436,12 +3442,14 @@ dependencies = [
  "flate2",
  "float-cmp",
  "hgvs",
+ "hxdmp",
  "indexmap 2.0.2",
  "insta",
  "itertools",
  "log",
  "mehari",
  "multimap 0.9.0",
+ "noodles-bgzf",
  "noodles-vcf",
  "pretty_assertions",
  "procfs",
diff --git a/Cargo.toml b/Cargo.toml
index af2f08ee..7572b6a6 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -49,6 +49,7 @@ tracing-subscriber = "0.3"
 uuid = { version = "1.4", features = ["v4", "fast-rng", "serde"] }
 noodles-vcf = "0.40.0"
 rocksdb = { version = "0.21.0", features = ["multi-threaded-cf"] }
+noodles-bgzf = "0.24.0"
 
 
 [build-dependencies]
@@ -57,6 +58,7 @@ prost-build = "0.12"
 [dev-dependencies]
 file_diff = "1.0"
 float-cmp = "0.9.0"
+hxdmp = "0.2.1"
 insta = { version = "1.32", features = ["yaml"] }
 pretty_assertions = "1.4"
 rstest = "0.18.2"
diff --git a/README.md b/README.md
index 9f2a33a2..992fa3dd 100644
--- a/README.md
+++ b/README.md
@@ -80,9 +80,7 @@ The command interprets the following fields which are written out by the commonl
 - `FORMAT/GQ` -- genotype quality
 - `FORMAT/DP` -- total read coverage
 - `FORMAT/AD` -- allelic depth, one value per allele (including reference0)
-- `FORMAT/PID` -- physical phasing information as written out by GATK HaplotypeCaller in GVCF workflow
-- `FORMAT/PS` -- physical phasing information as written out by Dragen variant caller
-    - this field fill be written as `FORMAT/PID`
+- `FORMAT/PS` -- physical phasing information as written out by GATK HaplotypeCaller in GVCF workflow and Dragen variant caller
 - `FORMAT/SQ` -- "somatic quality" for each alternate allele, as written out by Illumina Dragen variant caller
     - this field will be written as `FORMAT/GQ`
 
diff --git a/src/seqvars/ingest/header.rs b/src/seqvars/ingest/header.rs
index 0a658ab4..ac857839 100644
--- a/src/seqvars/ingest/header.rs
+++ b/src/seqvars/ingest/header.rs
@@ -184,7 +184,6 @@ pub fn build_output_header(
     genomebuild: GenomeRelease,
     worker_version: &str,
 ) -> Result<vcf::Header, anyhow::Error> {
-    use vcf::header::record::value::map::format::Type as FormatType;
     use vcf::header::record::value::{
         map::{info::Type, Filter, Format, Info},
         Map,
@@ -300,17 +299,7 @@ pub fn build_output_header(
             Map::<Format>::from(&key::CONDITIONAL_GENOTYPE_QUALITY),
         )
         .add_format(key::GENOTYPE, Map::<Format>::from(&key::GENOTYPE))
-        .add_format(
-            "PID".parse()?,
-            Map::<Format>::builder()
-                .set_number(Number::Count(1))
-                .set_type(FormatType::String)
-                .set_description(
-                    "Physical phasing ID information, where each unique ID within a given sample \
-                    (but not across samples) connects records within a phasing group",
-                )
-                .build()?,
-        );
+        .add_format(key::PHASE_SET, Map::<Format>::from(&key::PHASE_SET));
 
     let mut builder = match genomebuild {
         GenomeRelease::Grch37 => add_contigs_37(builder),
diff --git a/src/seqvars/ingest/mod.rs b/src/seqvars/ingest/mod.rs
index 133e1cac..3b4521d0 100644
--- a/src/seqvars/ingest/mod.rs
+++ b/src/seqvars/ingest/mod.rs
@@ -2,7 +2,7 @@
 
 use std::sync::{Arc, OnceLock};
 
-use crate::common::{self, GenomeRelease};
+use crate::common::{self, open_read_maybe_gz, open_write_maybe_gz, GenomeRelease};
 use mehari::annotate::seqvars::provider::MehariProvider;
 use noodles_vcf as vcf;
 use thousands::Separable;
@@ -73,27 +73,20 @@ impl Default for KnownFormatKeys {
                 vcf::record::genotypes::keys::key::CONDITIONAL_GENOTYPE_QUALITY, // GQ
                 vcf::record::genotypes::keys::key::READ_DEPTH, // DP
                 vcf::record::genotypes::keys::key::READ_DEPTHS, // AD
-                "PID".parse().expect("invalid key: PID"),
+                vcf::record::genotypes::keys::key::PHASE_SET, // PS
             ],
             known_keys: vec![
                 vcf::record::genotypes::keys::key::GENOTYPE,
                 vcf::record::genotypes::keys::key::CONDITIONAL_GENOTYPE_QUALITY,
                 vcf::record::genotypes::keys::key::READ_DEPTH,
                 vcf::record::genotypes::keys::key::READ_DEPTHS,
-                "PID".parse().expect("invalid key: PID"),
-                "PS".parse().expect("invalid key: PS"), // written as PID
-                "SQ".parse().expect("invalid key: SQ"), // written as AD
+                vcf::record::genotypes::keys::key::PHASE_SET, // PS
+                "SQ".parse().expect("invalid key: SQ"),       // written as AD
             ],
-            known_to_output_map: vec![
-                (
-                    "PS".parse().expect("invalid key: PS"),
-                    "PID".parse().expect("invalid key: PID"),
-                ),
-                (
-                    "SQ".parse().expect("invalid key: SQ"),
-                    vcf::record::genotypes::keys::key::CONDITIONAL_GENOTYPE_QUALITY,
-                ),
-            ]
+            known_to_output_map: vec![(
+                "SQ".parse().expect("invalid key: SQ"),
+                vcf::record::genotypes::keys::key::CONDITIONAL_GENOTYPE_QUALITY,
+            )]
             .into_iter()
             .collect(),
         }
@@ -132,15 +125,6 @@ fn transform_format_value(
                     _ => return None, // unreachable!("FORMAT/AD must be array of integer"),
                 }
             }
-            "PS" => {
-                // PS is written as PID.
-                match *value {
-                    vcf::record::genotypes::sample::Value::Integer(ps_value) => {
-                        vcf::record::genotypes::sample::Value::String(format!("{}", ps_value))
-                    }
-                    _ => return None, // unreachable!("FORMAT/PS must be integer"),
-                }
-            }
             "SQ" => {
                 // SQ is written as AD.
                 match *value {
@@ -218,13 +202,17 @@ fn copy_format(
 }
 
 /// Process the variants from `input_reader` to `output_writer`.
-fn process_variants(
-    output_writer: &mut vcf::Writer<std::io::BufWriter<std::fs::File>>,
-    input_reader: &mut vcf::Reader<std::io::BufReader<std::fs::File>>,
+fn process_variants<R, W>(
+    output_writer: &mut vcf::Writer<W>,
+    input_reader: &mut vcf::Reader<R>,
     output_header: &vcf::Header,
     input_header: &vcf::Header,
     args: &Args,
-) -> Result<(), anyhow::Error> {
+) -> Result<(), anyhow::Error>
+where
+    R: std::io::BufRead,
+    W: std::io::Write,
+{
     // Open the frequency RocksDB database in read only mode.
     tracing::info!("Opening frequency database");
     let rocksdb_path = format!(
@@ -323,8 +311,7 @@ fn process_variants(
                 let mut output_record = builder.build()?;
 
                 // Obtain annonars variant key from current allele for RocksDB lookup.
-                let vcf_var =
-                    annonars::common::keys::Var::from_vcf_allele(&output_record, allele_no);
+                let vcf_var = annonars::common::keys::Var::from_vcf_allele(&output_record, 0);
 
                 // Skip records with a deletion as alternative allele.
                 if vcf_var.alternative == "*" {
@@ -449,11 +436,8 @@ pub fn run(args_common: &crate::common::Args, args: &Args) -> Result<(), anyhow:
 
     tracing::info!("opening input file...");
     let mut input_reader = {
-        let file = std::fs::File::open(&args.path_in)
-            .map_err(|e| anyhow::anyhow!("could not open input file {}: {}", &args.path_in, e))
-            .map(std::io::BufReader::new)?;
         vcf::reader::Builder
-            .build_from_reader(file)
+            .build_from_reader(open_read_maybe_gz(&args.path_in)?)
             .map_err(|e| anyhow::anyhow!("could not build VCF reader: {}", e))?
     };
 
@@ -469,17 +453,7 @@ pub fn run(args_common: &crate::common::Args, args: &Args) -> Result<(), anyhow:
     )
     .map_err(|e| anyhow::anyhow!("problem building output header: {}", e))?;
 
-    let mut output_writer = {
-        let writer = std::fs::File::create(&args.path_out).map_err(|e| {
-            anyhow::anyhow!(
-                "could not output file for writing {}: {}",
-                &args.path_out,
-                e
-            )
-        })?;
-        let writer = std::io::BufWriter::new(writer);
-        vcf::writer::Writer::new(writer)
-    };
+    let mut output_writer = { vcf::writer::Writer::new(open_write_maybe_gz(&args.path_out)?) };
     output_writer
         .write_header(&output_header)
         .map_err(|e| anyhow::anyhow!("problem writing header: {}", e))?;
@@ -501,6 +475,8 @@ pub fn run(args_common: &crate::common::Args, args: &Args) -> Result<(), anyhow:
 
 #[cfg(test)]
 mod test {
+    use std::io::Read;
+
     use rstest::rstest;
 
     use crate::common::GenomeRelease;
@@ -544,4 +520,44 @@ mod test {
 
         Ok(())
     }
+
+    fn read_to_bytes<P>(path: P) -> Result<Vec<u8>, anyhow::Error>
+    where
+        P: AsRef<std::path::Path>,
+    {
+        let mut f = std::fs::File::open(&path).expect("no file found");
+        let metadata = std::fs::metadata(&path).expect("unable to read metadata");
+        let mut buffer = vec![0; metadata.len() as usize];
+        f.read(&mut buffer).expect("buffer overflow");
+        Ok(buffer)
+    }
+
+    #[test]
+    fn result_snapshot_test_gz() -> Result<(), anyhow::Error> {
+        let tmpdir = temp_testdir::TempDir::default();
+
+        let path_in: String = "tests/seqvars/ingest/NA12878_dragen.vcf.gz".into();
+        let path_ped = path_in.replace(".vcf.gz", ".ped");
+        let path_out = tmpdir
+            .join("out.vcf.gz")
+            .to_str()
+            .expect("invalid path")
+            .into();
+        let args_common = Default::default();
+        let args = super::Args {
+            max_var_count: None,
+            path_mehari_db: "tests/seqvars/ingest/db".into(),
+            path_ped,
+            genomebuild: GenomeRelease::Grch37,
+            path_in,
+            path_out,
+        };
+        super::run(&args_common, &args)?;
+
+        let mut buffer = Vec::new();
+        hxdmp::hexdump(&read_to_bytes(&args.path_out)?, &mut buffer)?;
+        insta::assert_snapshot!(String::from_utf8_lossy(&buffer));
+
+        Ok(())
+    }
 }
diff --git a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_dragen.07.021.624.3.10.4.vcf.snap b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_dragen.07.021.624.3.10.4.vcf.snap
index 64a8c516..bd8cddd1 100644
--- a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_dragen.07.021.624.3.10.4.vcf.snap
+++ b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_dragen.07.021.624.3.10.4.vcf.snap
@@ -20,7 +20,7 @@ expression: "std::fs::read_to_string(out_path_str)?"
 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
+##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set">
 ##contig=<ID=1,length=249250621,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=2,length=243199373,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=3,length=198022430,assembly="GRCh37",species="Homo sapiens">
diff --git a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_dragen.07.021.624.3.10.9.vcf.snap b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_dragen.07.021.624.3.10.9.vcf.snap
index 504e97b8..0ac20822 100644
--- a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_dragen.07.021.624.3.10.9.vcf.snap
+++ b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_dragen.07.021.624.3.10.9.vcf.snap
@@ -20,7 +20,7 @@ expression: "std::fs::read_to_string(out_path_str)?"
 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
+##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set">
 ##contig=<ID=1,length=249250621,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=2,length=243199373,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=3,length=198022430,assembly="GRCh37",species="Homo sapiens">
diff --git a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_gatk_hc.3.7-0.vcf.snap b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_gatk_hc.3.7-0.vcf.snap
index 606973d1..6db95979 100644
--- a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_gatk_hc.3.7-0.vcf.snap
+++ b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_gatk_hc.3.7-0.vcf.snap
@@ -20,7 +20,7 @@ expression: "std::fs::read_to_string(out_path_str)?"
 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
+##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set">
 ##contig=<ID=1,length=249250621,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=2,length=243199373,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=3,length=198022430,assembly="GRCh37",species="Homo sapiens">
diff --git a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_gatk_hc.4.4.0.0.vcf.snap b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_gatk_hc.4.4.0.0.vcf.snap
index e75108df..cb817ee3 100644
--- a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_gatk_hc.4.4.0.0.vcf.snap
+++ b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_37@example_gatk_hc.4.4.0.0.vcf.snap
@@ -20,7 +20,7 @@ expression: "std::fs::read_to_string(out_path_str)?"
 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
+##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set">
 ##contig=<ID=1,length=249250621,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=2,length=243199373,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=3,length=198022430,assembly="GRCh37",species="Homo sapiens">
diff --git a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_dragen.07.021.624.3.10.4.vcf.snap b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_dragen.07.021.624.3.10.4.vcf.snap
index 04ab2618..4cf1ccfd 100644
--- a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_dragen.07.021.624.3.10.4.vcf.snap
+++ b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_dragen.07.021.624.3.10.4.vcf.snap
@@ -20,7 +20,7 @@ expression: "std::fs::read_to_string(out_path_str)?"
 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
+##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set">
 ##contig=<ID=chr1,length=248956422,assembly="GRCh38",species="Homo sapiens">
 ##contig=<ID=chr2,length=242193529,assembly="GRCh38",species="Homo sapiens">
 ##contig=<ID=chr3,length=198295559,assembly="GRCh38",species="Homo sapiens">
diff --git a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_dragen.07.021.624.3.10.9.vcf.snap b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_dragen.07.021.624.3.10.9.vcf.snap
index ffb1a8fa..54721644 100644
--- a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_dragen.07.021.624.3.10.9.vcf.snap
+++ b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_dragen.07.021.624.3.10.9.vcf.snap
@@ -20,7 +20,7 @@ expression: "std::fs::read_to_string(out_path_str)?"
 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
+##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set">
 ##contig=<ID=chr1,length=248956422,assembly="GRCh38",species="Homo sapiens">
 ##contig=<ID=chr2,length=242193529,assembly="GRCh38",species="Homo sapiens">
 ##contig=<ID=chr3,length=198295559,assembly="GRCh38",species="Homo sapiens">
diff --git a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_gatk_hc.3.7-0.vcf.snap b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_gatk_hc.3.7-0.vcf.snap
index 98f14248..e1a92636 100644
--- a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_gatk_hc.3.7-0.vcf.snap
+++ b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_gatk_hc.3.7-0.vcf.snap
@@ -20,7 +20,7 @@ expression: "std::fs::read_to_string(out_path_str)?"
 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
+##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set">
 ##contig=<ID=chr1,length=248956422,assembly="GRCh38",species="Homo sapiens">
 ##contig=<ID=chr2,length=242193529,assembly="GRCh38",species="Homo sapiens">
 ##contig=<ID=chr3,length=198295559,assembly="GRCh38",species="Homo sapiens">
diff --git a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_gatk_hc.4.4.0.0.vcf.snap b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_gatk_hc.4.4.0.0.vcf.snap
index 76a3c2f3..6944a30d 100644
--- a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_gatk_hc.4.4.0.0.vcf.snap
+++ b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__header__test__build_output_header_38@example_gatk_hc.4.4.0.0.vcf.snap
@@ -20,7 +20,7 @@ expression: "std::fs::read_to_string(out_path_str)?"
 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
+##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set">
 ##contig=<ID=chr1,length=248956422,assembly="GRCh38",species="Homo sapiens">
 ##contig=<ID=chr2,length=242193529,assembly="GRCh38",species="Homo sapiens">
 ##contig=<ID=chr3,length=198295559,assembly="GRCh38",species="Homo sapiens">
diff --git a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@Case_1_vcf.snap b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@Case_1_vcf.snap
new file mode 100644
index 00000000..a79c8c31
--- /dev/null
+++ b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@Case_1_vcf.snap
@@ -0,0 +1,121 @@
+---
+source: src/seqvars/ingest/mod.rs
+expression: "std::fs::read_to_string(&args.path_out)?"
+---
+##fileformat=VCFv4.4
+##INFO=<ID=gnomad_exomes_an,Number=1,Type=Integer,Description="Number of samples in gnomAD exomes">
+##INFO=<ID=gnomad_exomes_hom,Number=1,Type=Integer,Description="Number of hom. alt. carriers in gnomAD exomes">
+##INFO=<ID=gnomad_exomes_het,Number=1,Type=Integer,Description="Number of het. alt. carriers in gnomAD exomes">
+##INFO=<ID=gnomad_exomes_hemi,Number=1,Type=Integer,Description="Number of hemi. alt. carriers in gnomAD exomes">
+##INFO=<ID=gnomad_genomes_an,Number=1,Type=Integer,Description="Number of samples in gnomAD genomes">
+##INFO=<ID=gnomad_genomes_hom,Number=1,Type=Integer,Description="Number of hom. alt. carriers in gnomAD genomes">
+##INFO=<ID=gnomad_genomes_het,Number=1,Type=Integer,Description="Number of het. alt. carriers in gnomAD genomes">
+##INFO=<ID=gnomad_genomes_hemi,Number=1,Type=Integer,Description="Number of hemi. alt. carriers in gnomAD genomes">
+##INFO=<ID=helix_an,Number=1,Type=Integer,Description="Number of samples in HelixMtDb">
+##INFO=<ID=helix_hom,Number=1,Type=Integer,Description="Number of hom. alt. carriers in HelixMtDb">
+##INFO=<ID=helix_het,Number=1,Type=Integer,Description="Number of het. alt. carriers in HelixMtDb">
+##INFO=<ID=ANN,Number=.,Type=String,Description="Functional annotations: 'Allele | Annotation | Annotation_Impact | Gene_Name | Gene_ID | Feature_Type | Feature_ID | Transcript_BioType | Rank | HGVS.c | HGVS.p | cDNA.pos / cDNA.length | CDS.pos / CDS.length | AA.pos / AA.length | Distance | ERRORS / WARNINGS / INFO'">
+##FILTER=<ID=PASS,Description="All filters passed">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set">
+##contig=<ID=1,length=249250621,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=2,length=243199373,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=3,length=198022430,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=4,length=191154276,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=5,length=180915260,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=6,length=171115067,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=7,length=159138663,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=8,length=146364022,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=9,length=141213431,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=10,length=135534747,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=11,length=135006516,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=12,length=133851895,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=13,length=115169878,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=14,length=107349540,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=15,length=102531392,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=16,length=90354753,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=17,length=81195210,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=18,length=78077248,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=19,length=59128983,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=20,length=63025520,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=21,length=48129895,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=22,length=51304566,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=X,length=155270560,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=Y,length=59373566,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=MT,length=16569,assembly="GRCh37",species="Homo sapiens">
+##SAMPLE=<ID=Case_1_father-N1-DNA1-WGS1,Sex="Male",Disease="Unaffected">
+##SAMPLE=<ID=Case_1_index-N1-DNA1-WGS1,Sex="Female",Disease="Affected">
+##SAMPLE=<ID=Case_1_mother-N1-DNA1-WGS1,Sex="Female",Disease="Unaffected">
+##PEDIGREE=<ID=Case_1_father-N1-DNA1-WGS1>
+##PEDIGREE=<ID=Case_1_index-N1-DNA1-WGS1,Father="Case_1_father-N1-DNA1-WGS1",Mother="Case_1_mother-N1-DNA1-WGS1">
+##PEDIGREE=<ID=Case_1_mother-N1-DNA1-WGS1>
+##x-varfish-version=<ID=varfish-server-worker,Version="x.y.z">
+##x-varfish-version=<ID=orig-caller,Name="GatkHaplotypeCaller",Version="3.7-0-gcfedb67">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	Case_1_father-N1-DNA1-WGS1	Case_1_index-N1-DNA1-WGS1	Case_1_mother-N1-DNA1-WGS1
+17	41249263	.	G	A	.	.	gnomad_exomes_an=31398;gnomad_exomes_hom=0;gnomad_exomes_het=56;gnomad_genomes_an=251304;gnomad_genomes_hom=0;gnomad_genomes_het=369;clinvar_clinsig=benign;clinvar_rcv=RCV001353617;ANN=A|splice_region_variant&synonymous_variant|MODERATE|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|8/23|c.591C>T|p.C197=|704/7088|591/5592|197/1864|44|,A|splice_region_variant&synonymous_variant|MODERATE|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|7/22|c.450C>T|p.C150=|644/7028|450/5451|150/1817|44|,A|splice_region_variant&synonymous_variant|MODERATE|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|8/22|c.591C>T|p.C197=|698/3696|591/2100|197/700|44|,A|splice_region_variant&synonymous_variant|MODERATE|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|8/24|c.591C>T|p.C197=|704/7151|591/5655|197/1885|44|	GT:AD:DP:GQ	0/0:52:52:99	0/0:46:46:99	0/1:21:42:99
+17	41252332	.	T	C	.	.	ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.442-435A>G|p.?|555/7088|442/5592||-434|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.301-435A>G|p.?|495/7028|301/5451||-434|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.442-435A>G|p.?|549/3696|442/2100||-434|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.442-435A>G|p.?|555/7151|442/5655||-434|	GT:AD:DP:GQ	0/0:25:25:75	0/1:14:28:99	0/1:19:40:99
+17	41252691	.	ATATAAT	A	.	.	gnomad_exomes_an=2368;gnomad_exomes_hom=10;gnomad_exomes_het=80;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.442-800_442-795delATTATA|p.?|555/7088|442/5592||-794|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.301-800_301-795delATTATA|p.?|495/7028|301/5451||-794|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.442-800_442-795delATTATA|p.?|549/3696|442/2100||-794|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.442-800_442-795delATTATA|p.?|555/7151|442/5655||-794|	GT:AD:DP:GQ	0/0:9:9:27	0/1:4:14:99	0/1:12:23:99
+17	41252693	.	ATAAT	A	.	.	gnomad_exomes_an=3866;gnomad_exomes_hom=244;gnomad_exomes_het=618;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.442-800_442-797delATTA|p.?|555/7088|442/5592||-796|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.301-800_301-797delATTA|p.?|495/7028|301/5451||-796|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.442-800_442-797delATTA|p.?|549/3696|442/2100||-796|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.442-800_442-797delATTA|p.?|555/7151|442/5655||-796|	GT:AD:DP:GQ	0/0:9:9:27	0/0:14:14:42	0/1:11:22:99
+17	41252695	.	AAT	A	.	.	gnomad_exomes_an=5066;gnomad_exomes_hom=546;gnomad_exomes_het=795;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.442-800_442-799delAT|p.?|555/7088|442/5592||-798|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.301-800_301-799delAT|p.?|495/7028|301/5451||-798|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.442-800_442-799delAT|p.?|549/3696|442/2100||-798|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.442-800_442-799delAT|p.?|555/7151|442/5655||-798|	GT:AD:DP:GQ	0/1:3:9:79	0/0:14:14:42	0/0:22:22:66
+17	41252696	.	A	T	.	.	gnomad_exomes_an=4200;gnomad_exomes_hom=29;gnomad_exomes_het=334;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.442-799T>A|p.?|555/7088|442/5592||-798|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.301-799T>A|p.?|495/7028|301/5451||-798|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.442-799T>A|p.?|549/3696|442/2100||-798|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.442-799T>A|p.?|555/7151|442/5655||-798|	GT:AD:DP:GQ	0/1:6:9:78	0/1:10:14:98	0/0:22:22:67
+17	41252697	.	A	AT	.	.	ANN=AT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.442-801_442-800insA|p.?|555/7088|442/5592||-800|,AT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.301-801_301-800insA|p.?|495/7028|301/5451||-800|,AT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.442-801_442-800insA|p.?|549/3696|442/2100||-800|,AT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.442-801_442-800insA|p.?|555/7151|442/5655||-800|	GT:AD:DP:GQ	1/1:0:45:99	1/2:0:33:99	1/2:1:33:99
+17	41252697	.	A	ATT	.	.	ANN=ATT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.442-801_442-800insAA|p.?|555/7088|442/5592||-800|,ATT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.301-801_301-800insAA|p.?|495/7028|301/5451||-800|,ATT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.442-801_442-800insAA|p.?|549/3696|442/2100||-800|,ATT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.442-801_442-800insAA|p.?|555/7151|442/5655||-800|	GT:AD:DP:GQ	1/1:45:45:99	1/2:17:33:99	1/2:11:33:99
+17	41254393	.	G	T	.	.	gnomad_exomes_an=1936;gnomad_exomes_hom=0;gnomad_exomes_het=167;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+1746C>A|p.?|554/7088|441/5592||1745|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+1746C>A|p.?|494/7028|300/5451||1745|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+1746C>A|p.?|548/3696|441/2100||1745|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+1746C>A|p.?|554/7151|441/5655||1745|	GT:AD:DP:GQ	0/1:29:37:66	./.:.:.:.	0/0:32:35:47
+17	41273700	.	C	CA	.	.	ANN=CA|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|2/22|c.80+2333_80+2334insT|p.?|193/7088|80/5592||2333|,CA|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-8+2333_-8+2334insT|p.?|187/7028|-8/5451||2333|,CA|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|2/21|c.80+2333_80+2334insT|p.?|187/3696|80/2100||2333|,CA|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|2/23|c.80+2333_80+2334insT|p.?|193/7151|80/5655||2333|	GT:AD:DP:GQ	0/0:14:14:42	0/0:6:7:10	0/1:5:10:65
+MT	73	.	A	G	.	.	.	GT:AD:DP:GQ	0/0:3975:3975:99	1/1:0:2871:99	1/1:0:3320:99
+MT	119	.	T	C	.	.	.	GT:AD:DP:GQ	0/0:5417:5418:99	1/1:0:4039:99	1/1:1:4113:99
+MT	189	.	A	G	.	.	.	GT:AD:DP:GQ	0/0:3069:3069:99	1/1:0:1721:99	1/1:0:2204:99
+MT	195	.	T	C	.	.	.	GT:AD:DP:GQ	0/0:2599:2599:99	1/1:0:1592:99	1/1:0:1815:99
+MT	204	.	T	C	.	.	.	GT:AD:DP:GQ	0/0:2180:2180:99	1/1:0:1424:99	1/1:0:1304:99
+MT	207	.	G	A	.	.	.	GT:AD:DP:GQ	0/0:2115:2115:99	1/1:0:1408:99	1/1:0:1277:99
+MT	263	.	A	G	.	.	.	GT:AD:DP:GQ	1/1:0:1288:99	1/1:0:1204:99	1/1:0:1031:99
+MT	302	.	A	ACC	.	.	.	GT:AD:DP:GQ	0/1:157:844:99	0/0:1005:1011:99	0/0:800:803:99
+MT	310	.	T	TC	.	.	.	GT:AD:DP:GQ	1/1:0:1035:99	1/1:0:1411:99	1/1:1:1091:99
+MT	477	.	T	C	.	.	.	GT:AD:DP:GQ	1/1:4:2133:99	0/0:2266:2267:99	0/0:1725:1725:99
+MT	709	.	G	A	.	.	.	GT:AD:DP:GQ	0/0:2494:2494:99	1/1:0:2186:99	1/1:1:1814:99
+MT	750	.	A	G	.	.	.	GT:AD:DP:GQ	1/1:0:2757:99	1/1:0:2392:99	1/1:0:1621:99
+MT	879	.	T	C	.	.	.	GT:AD:DP:GQ	0/0:2853:2853:99	0/0:2784:2784:99	0/1:1351:1898:99
+MT	1243	.	T	C	.	.	.	GT:AD:DP:GQ	0/0:2674:2675:99	1/1:0:2198:99	1/1:0:1655:99
+MT	1438	.	A	G	.	.	.	GT:AD:DP:GQ	1/1:0:3815:99	1/1:0:3653:99	1/1:0:2900:99
+MT	1824	.	T	C	.	.	.	GT:AD:DP:GQ	1/1:0:2668:99	0/0:2409:2409:99	0/0:1752:1752:99
+MT	2633	.	A	G	.	.	.	GT:AD:DP:GQ	0/0:2535:2535:99	0/1:1648:2409:99	0/0:2269:2269:99
+MT	2706	.	A	G	.	.	.	GT:AD:DP:GQ	0/0:3200:3200:99	1/1:0:2847:99	1/1:0:2020:99
+MT	3010	.	G	A	.	.	.	GT:AD:DP:GQ	1/1:0:2841:99	0/0:2385:2385:99	0/0:1685:1685:99
+MT	3505	.	A	G	.	.	.	GT:AD:DP:GQ	0/0:2580:2594:99	1/1:0:2363:99	1/1:0:1664:99
+MT	3784	.	T	C	.	.	.	GT:AD:DP:GQ	0/1:480:2936:99	0/0:2504:2504:99	0/0:1991:1991:99
+MT	4769	.	A	G	.	.	.	GT:AD:DP:GQ	1/1:0:2689:99	1/1:0:2549:99	1/1:0:2108:99
+MT	5046	.	G	A	.	.	.	GT:AD:DP:GQ	0/0:2876:2878:99	1/1:0:2466:99	1/1:0:1661:99
+MT	5460	.	G	A	.	.	.	GT:AD:DP:GQ	0/0:2905:2907:99	1/1:0:2759:99	1/1:2:1970:99
+MT	7028	.	C	T	.	.	.	GT:AD:DP:GQ	0/0:2577:2580:99	1/1:2:2203:99	1/1:1:1946:99
+MT	7864	.	C	T	.	.	.	GT:AD:DP:GQ	0/0:3588:3589:99	1/1:0:3465:99	1/1:0:2746:99
+MT	8170	.	A	G	.	.	.	GT:AD:DP:GQ	0/0:2051:2052:99	1/1:0:2257:99	1/1:0:1774:99
+MT	8251	.	G	A	.	.	.	GT:AD:DP:GQ	0/0:2360:2360:99	1/1:0:2317:99	1/1:1:1625:99
+MT	8860	.	A	G	.	.	.	GT:AD:DP:GQ	1/1:0:3278:99	1/1:0:3088:99	1/1:0:2241:99
+MT	8994	.	G	A	.	.	.	GT:AD:DP:GQ	0/0:2793:2793:99	1/1:0:2368:99	1/1:1:1918:99
+MT	9007	.	A	G	.	.	.	GT:AD:DP:GQ	1/1:0:2959:99	0/0:2442:2442:99	0/0:1735:1735:99
+MT	9150	.	A	G	.	.	.	GT:AD:DP:GQ	1/1:0:3163:99	0/0:3538:3538:99	0/0:2767:2767:99
+MT	9380	.	G	A	.	.	.	GT:AD:DP:GQ	1/1:1:3321:99	0/0:3222:3222:99	0/0:2547:2547:99
+MT	10097	.	A	G	.	.	.	GT:AD:DP:GQ	0/0:2660:2660:99	0/1:1680:2188:99	0/0:1851:1851:99
+MT	11204	.	T	C	.	.	.	GT:AD:DP:GQ	0/0:3168:3173:99	1/1:0:2922:99	1/1:0:2418:99
+MT	11674	.	C	T	.	.	.	GT:AD:DP:GQ	0/0:2890:2890:99	1/1:0:2666:99	1/1:1:2180:99
+MT	11719	.	G	A	.	.	.	GT:AD:DP:GQ	0/0:3339:3341:99	1/1:0:3052:99	1/1:0:2203:99
+MT	11947	.	A	G	.	.	.	GT:AD:DP:GQ	0/0:2579:2581:99	1/1:0:2273:99	1/1:0:1804:99
+MT	12414	.	T	C	.	.	.	GT:AD:DP:GQ	0/0:2852:2855:99	1/1:1:2546:99	1/1:0:1733:99
+MT	12648	.	A	G	.	.	.	GT:AD:DP:GQ	0/0:1812:1813:99	1/1:2:1664:99	1/1:4:1781:99
+MT	12705	.	C	T	.	.	.	GT:AD:DP:GQ	0/0:2359:2369:99	1/1:1:2138:99	1/1:1:1622:99
+MT	13406	.	G	A	.	.	.	GT:AD:DP:GQ	0/0:2539:2540:99	0/0:2216:2216:99	0/1:1224:1957:99
+MT	13611	.	A	G	.	.	.	GT:AD:DP:GQ	0/0:3838:3840:99	1/1:0:3717:99	1/1:1:2835:99
+MT	13928	.	G	C	.	.	.	GT:AD:DP:GQ	0/0:2947:2947:99	1/1:0:2700:99	1/1:0:1880:99
+MT	14148	.	A	G	.	.	.	GT:AD:DP:GQ	0/0:3019:3021:99	1/1:0:2820:99	1/1:0:1962:99
+MT	14766	.	C	T	.	.	.	GT:AD:DP:GQ	0/0:3318:3321:99	1/1:2:3113:99	1/1:3:2358:99
+MT	15326	.	A	G	.	.	.	GT:AD:DP:GQ	1/1:0:3716:99	1/1:0:3560:99	1/1:0:2690:99
+MT	15884	.	G	C	.	.	.	GT:AD:DP:GQ	0/0:3595:3596:99	1/1:0:3167:99	1/1:1:2734:99
+MT	16184	.	C	T	.	.	.	GT:AD:DP:GQ	0/0:1406:1407:99	1/1:0:1969:99	1/1:0:1478:99
+MT	16223	.	C	T	.	.	.	GT:AD:DP:GQ	0/0:1405:1406:99	1/1:0:2018:99	1/1:0:1472:99
+MT	16263	.	T	C	.	.	.	GT:AD:DP:GQ	1/1:2:1478:99	0/0:1994:1994:99	0/0:1475:1475:99
+MT	16292	.	C	T	.	.	.	GT:AD:DP:GQ	0/0:1652:1652:99	1/1:1:1914:99	1/1:0:1476:99
+MT	16519	.	T	C	.	.	.	GT:AD:DP:GQ	1/1:0:1759:99	1/1:0:4094:99	1/1:0:1744:99
+
diff --git a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@NA12878_dragen_vcf.snap b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@NA12878_dragen_vcf.snap
index dff16473..83cde40d 100644
--- a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@NA12878_dragen_vcf.snap
+++ b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@NA12878_dragen_vcf.snap
@@ -20,7 +20,7 @@ expression: "std::fs::read_to_string(&args.path_out)?"
 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
+##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set">
 ##contig=<ID=1,length=249250621,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=2,length=243199373,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=3,length=198022430,assembly="GRCh37",species="Homo sapiens">
@@ -69,17 +69,17 @@ expression: "std::fs::read_to_string(&args.path_out)?"
 17	41250923	.	T	C	.	.	gnomad_exomes_an=29782;gnomad_exomes_hom=4187;gnomad_exomes_het=6234;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191405;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|7/22|c.547+869A>G|p.?|660/7088|547/5592||868|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|6/21|c.406+869A>G|p.?|600/7028|406/5451||868|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|7/21|c.547+869A>G|p.?|654/3696|547/2100||868|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|7/23|c.547+869A>G|p.?|660/7151|547/5655||868|	GT:AD:DP:GQ	0/1:13:22:47
 17	41251495	.	C	G	.	.	gnomad_exomes_an=30850;gnomad_exomes_hom=1491;gnomad_exomes_het=6363;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV001640278;ANN=G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|7/22|c.547+297G>C|p.?|660/7088|547/5592||296|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|6/21|c.406+297G>C|p.?|600/7028|406/5451||296|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|7/21|c.547+297G>C|p.?|654/3696|547/2100||296|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|7/23|c.547+297G>C|p.?|660/7151|547/5655||296|	GT:AD:DP:GQ	0/1:11:26:48
 17	41251646	.	T	A	.	.	gnomad_exomes_an=31294;gnomad_exomes_hom=1592;gnomad_exomes_het=6693;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV002345409;ANN=A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|7/22|c.547+146A>T|p.?|660/7088|547/5592||145|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|6/21|c.406+146A>T|p.?|600/7028|406/5451||145|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|7/21|c.547+146A>T|p.?|654/3696|547/2100||145|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|7/23|c.547+146A>T|p.?|660/7151|547/5655||145|	GT:AD:DP:GQ	0/1:11:19:48
-17	41252575	.	G	A	.	.	gnomad_exomes_an=6888;gnomad_exomes_hom=193;gnomad_exomes_het=1277;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191411;ANN=A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.442-678C>T|p.?|555/7088|442/5592||-677|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.301-678C>T|p.?|495/7028|301/5451||-677|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.442-678C>T|p.?|549/3696|442/2100||-677|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.442-678C>T|p.?|555/7151|442/5655||-677|	GT:AD:DP:GQ:PID	1|1:0:3:5:41252575
-17	41252591	.	C	CAT	.	.	gnomad_exomes_an=10332;gnomad_exomes_hom=95;gnomad_exomes_het=571;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=CAT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.442-695_442-694insAT|p.?|555/7088|442/5592||-694|,CAT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.301-695_301-694insAT|p.?|495/7028|301/5451||-694|,CAT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.442-695_442-694insAT|p.?|549/3696|442/2100||-694|,CAT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.442-695_442-694insAT|p.?|555/7151|442/5655||-694|	GT:AD:DP:GQ:PID	1|1:0:2:4:41252575
+17	41252575	.	G	A	.	.	gnomad_exomes_an=6888;gnomad_exomes_hom=193;gnomad_exomes_het=1277;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191411;ANN=A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.442-678C>T|p.?|555/7088|442/5592||-677|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.301-678C>T|p.?|495/7028|301/5451||-677|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.442-678C>T|p.?|549/3696|442/2100||-677|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.442-678C>T|p.?|555/7151|442/5655||-677|	GT:AD:DP:GQ:PS	1|1:0:3:5:41252575
+17	41252591	.	C	CAT	.	.	gnomad_exomes_an=10332;gnomad_exomes_hom=95;gnomad_exomes_het=571;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=CAT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.442-695_442-694insAT|p.?|555/7088|442/5592||-694|,CAT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.301-695_301-694insAT|p.?|495/7028|301/5451||-694|,CAT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.442-695_442-694insAT|p.?|549/3696|442/2100||-694|,CAT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.442-695_442-694insAT|p.?|555/7151|442/5655||-694|	GT:AD:DP:GQ:PS	1|1:0:2:4:41252575
 17	41254174	.	A	G	.	.	gnomad_exomes_an=30142;gnomad_exomes_hom=1576;gnomad_exomes_het=6550;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191423;ANN=G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+1965T>C|p.?|554/7088|441/5592||1964|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+1965T>C|p.?|494/7028|300/5451||1964|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+1965T>C|p.?|548/3696|441/2100||1964|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+1965T>C|p.?|554/7151|441/5655||1964|	GT:AD:DP:GQ	0/1:14:27:48
 17	41254374	.	C	CTTTTTTTT	.	.	gnomad_exomes_an=15994;gnomad_exomes_hom=494;gnomad_exomes_het=1743;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=CTTTTTTTT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+1764_441+1765insAAAAAAAA|p.?|554/7088|441/5592||1764|,CTTTTTTTT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+1764_300+1765insAAAAAAAA|p.?|494/7028|300/5451||1764|,CTTTTTTTT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+1764_441+1765insAAAAAAAA|p.?|548/3696|441/2100||1764|,CTTTTTTTT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+1764_441+1765insAAAAAAAA|p.?|554/7151|441/5655||1764|	GT:AD:DP:GQ	0/1:6:13:48
 17	41254405	.	C	T	.	.	gnomad_exomes_an=24316;gnomad_exomes_hom=1000;gnomad_exomes_het=4795;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000256092;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+1734G>A|p.?|554/7088|441/5592||1733|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+1734G>A|p.?|494/7028|300/5451||1733|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+1734G>A|p.?|548/3696|441/2100||1733|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+1734G>A|p.?|554/7151|441/5655||1733|	GT:AD:DP:GQ	0/1:5:14:43
 17	41254486	.	T	G	.	.	gnomad_exomes_an=30560;gnomad_exomes_hom=4284;gnomad_exomes_het=6345;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191424;ANN=G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+1653A>C|p.?|554/7088|441/5592||1652|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+1653A>C|p.?|494/7028|300/5451||1652|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+1653A>C|p.?|548/3696|441/2100||1652|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+1653A>C|p.?|554/7151|441/5655||1652|	GT:AD:DP:GQ	0/1:8:23:46
 17	41254965	.	C	CT	.	.	gnomad_exomes_an=26726;gnomad_exomes_hom=2359;gnomad_exomes_het=6380;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000255713;ANN=CT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+1173_441+1174insA|p.?|554/7088|441/5592||1173|,CT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+1173_300+1174insA|p.?|494/7028|300/5451||1173|,CT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+1173_441+1174insA|p.?|548/3696|441/2100||1173|,CT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+1173_441+1174insA|p.?|554/7151|441/5655||1173|	GT:AD:DP:GQ	0/1:14:22:22
-17	41255102	.	A	G	.	.	gnomad_exomes_an=31104;gnomad_exomes_hom=1426;gnomad_exomes_het=6400;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191428;ANN=G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+1037T>C|p.?|554/7088|441/5592||1036|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+1037T>C|p.?|494/7028|300/5451||1036|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+1037T>C|p.?|548/3696|441/2100||1036|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+1037T>C|p.?|554/7151|441/5655||1036|	GT:AD:DP:GQ:PID	0|1:19:31:46:41255102
-17	41255111	.	A	T	.	.	gnomad_exomes_an=31114;gnomad_exomes_hom=1530;gnomad_exomes_het=6684;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191429;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+1028T>A|p.?|554/7088|441/5592||1027|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+1028T>A|p.?|494/7028|300/5451||1027|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+1028T>A|p.?|548/3696|441/2100||1027|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+1028T>A|p.?|554/7151|441/5655||1027|	GT:AD:DP:GQ:PID	0|1:19:31:46:41255102
-17	41256074	.	CA	C	.	.	gnomad_exomes_an=20150;gnomad_exomes_hom=2725;gnomad_exomes_het=5476;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+64delT|p.?|554/7088|441/5592||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+64delT|p.?|494/7028|300/5451||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+64delT|p.?|548/3696|441/2100||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+64delT|p.?|554/7151|441/5655||63|	GT:AD:DP:GQ:PID	0|1:11:17:43:41256074
-17	41256089	.	AAAAAAAAAGAAAAG	A	.	.	gnomad_exomes_an=28388;gnomad_exomes_hom=1079;gnomad_exomes_het=5744;gnomad_genomes_an=167932;gnomad_genomes_hom=9911;gnomad_genomes_het=23697;ANN=A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+36_441+49delCTTTTCTTTTTTTT|p.?|554/7088|441/5592||35|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+36_300+49delCTTTTCTTTTTTTT|p.?|494/7028|300/5451||35|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+36_441+49delCTTTTCTTTTTTTT|p.?|548/3696|441/2100||35|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+36_441+49delCTTTTCTTTTTTTT|p.?|554/7151|441/5655||35|	GT:AD:DP:GQ:PID	0|1:13:19:43:41256074
+17	41255102	.	A	G	.	.	gnomad_exomes_an=31104;gnomad_exomes_hom=1426;gnomad_exomes_het=6400;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191428;ANN=G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+1037T>C|p.?|554/7088|441/5592||1036|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+1037T>C|p.?|494/7028|300/5451||1036|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+1037T>C|p.?|548/3696|441/2100||1036|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+1037T>C|p.?|554/7151|441/5655||1036|	GT:AD:DP:GQ:PS	0|1:19:31:46:41255102
+17	41255111	.	A	T	.	.	gnomad_exomes_an=31114;gnomad_exomes_hom=1530;gnomad_exomes_het=6684;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191429;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+1028T>A|p.?|554/7088|441/5592||1027|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+1028T>A|p.?|494/7028|300/5451||1027|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+1028T>A|p.?|548/3696|441/2100||1027|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+1028T>A|p.?|554/7151|441/5655||1027|	GT:AD:DP:GQ:PS	0|1:19:31:46:41255102
+17	41256074	.	CA	C	.	.	gnomad_exomes_an=20150;gnomad_exomes_hom=2725;gnomad_exomes_het=5476;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+64delT|p.?|554/7088|441/5592||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+64delT|p.?|494/7028|300/5451||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+64delT|p.?|548/3696|441/2100||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+64delT|p.?|554/7151|441/5655||63|	GT:AD:DP:GQ:PS	0|1:11:17:43:41256074
+17	41256089	.	AAAAAAAAAGAAAAG	A	.	.	gnomad_exomes_an=28388;gnomad_exomes_hom=1079;gnomad_exomes_het=5744;gnomad_genomes_an=167932;gnomad_genomes_hom=9911;gnomad_genomes_het=23697;ANN=A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+36_441+49delCTTTTCTTTTTTTT|p.?|554/7088|441/5592||35|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+36_300+49delCTTTTCTTTTTTTT|p.?|494/7028|300/5451||35|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+36_441+49delCTTTTCTTTTTTTT|p.?|548/3696|441/2100||35|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+36_441+49delCTTTTCTTTTTTTT|p.?|554/7151|441/5655||35|	GT:AD:DP:GQ:PS	0|1:13:19:43:41256074
 17	41257134	.	T	C	.	.	gnomad_exomes_an=31346;gnomad_exomes_hom=4418;gnomad_exomes_het=6505;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV002415590;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|4/22|c.213-161A>G|p.?|326/7088|213/5592||-160|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|3/21|c.72-161A>G|p.?|266/7028|72/5451||-160|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|4/21|c.213-161A>G|p.?|320/3696|213/2100||-160|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|4/23|c.213-161A>G|p.?|326/7151|213/5655||-160|	GT:AD:DP:GQ	0/1:14:29:48
 17	41257458	.	A	C	.	.	gnomad_exomes_an=31258;gnomad_exomes_hom=1500;gnomad_exomes_het=6414;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191434;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|4/22|c.213-485T>G|p.?|326/7088|213/5592||-484|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|3/21|c.72-485T>G|p.?|266/7028|72/5451||-484|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|4/21|c.213-485T>G|p.?|320/3696|213/2100||-484|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|4/23|c.213-485T>G|p.?|326/7151|213/5655||-484|	GT:AD:DP:GQ	0/1:11:26:48
 17	41258043	.	C	T	.	.	gnomad_exomes_an=30426;gnomad_exomes_hom=1538;gnomad_exomes_het=6460;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191436;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|4/22|c.212+430G>A|p.?|325/7088|212/5592||429|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|3/21|c.71+430G>A|p.?|265/7028|71/5451||429|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|4/21|c.212+430G>A|p.?|319/3696|212/2100||429|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|4/23|c.212+430G>A|p.?|325/7151|212/5655||429|	GT:AD:DP:GQ	0/1:14:27:48
@@ -97,20 +97,20 @@ expression: "std::fs::read_to_string(&args.path_out)?"
 17	41263566	.	T	C	.	.	gnomad_exomes_an=29818;gnomad_exomes_hom=1603;gnomad_exomes_het=6680;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191462;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+4177A>G|p.?|247/7088|134/5592||4176|,C|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-5016A>G|p.?|188/7028|-7/5451||-5015|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+4177A>G|p.?|241/3696|134/2100||4176|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+4177A>G|p.?|247/7151|134/5655||4176|	GT:AD:DP:GQ	0/1:11:19:48
 17	41264146	.	G	A	.	.	gnomad_exomes_an=30782;gnomad_exomes_hom=1483;gnomad_exomes_het=6307;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191465;ANN=A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+3597C>T|p.?|247/7088|134/5592||3596|,A|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-5596C>T|p.?|188/7028|-7/5451||-5595|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+3597C>T|p.?|241/3696|134/2100||3596|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+3597C>T|p.?|247/7151|134/5655||3596|	GT:AD:DP:GQ	0/1:13:20:45
 17	41264364	.	A	G	.	.	gnomad_exomes_an=31320;gnomad_exomes_hom=1500;gnomad_exomes_het=6409;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191467;ANN=G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+3379T>C|p.?|247/7088|134/5592||3378|,G|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-5814T>C|p.?|188/7028|-7/5451||-5813|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+3379T>C|p.?|241/3696|134/2100||3378|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+3379T>C|p.?|247/7151|134/5655||3378|	GT:AD:DP:GQ	0/1:8:24:45
-17	41264739	.	C	T	.	.	gnomad_exomes_an=30908;gnomad_exomes_hom=3162;gnomad_exomes_het=7226;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000255084;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+3004G>A|p.?|247/7088|134/5592||3003|,T|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-6189G>A|p.?|188/7028|-7/5451||-6188|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+3004G>A|p.?|241/3696|134/2100||3003|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+3004G>A|p.?|247/7151|134/5655||3003|	GT:AD:DP:GQ:PID	0|1:14:29:48:41264739
+17	41264739	.	C	T	.	.	gnomad_exomes_an=30908;gnomad_exomes_hom=3162;gnomad_exomes_het=7226;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000255084;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+3004G>A|p.?|247/7088|134/5592||3003|,T|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-6189G>A|p.?|188/7028|-7/5451||-6188|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+3004G>A|p.?|241/3696|134/2100||3003|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+3004G>A|p.?|247/7151|134/5655||3003|	GT:AD:DP:GQ:PS	0|1:14:29:48:41264739
 17	41264740	.	TGA	T	.	.	gnomad_exomes_an=31014;gnomad_exomes_hom=3159;gnomad_exomes_het=7229;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+3001_134+3002delTC|p.?|247/7088|134/5592||3000|,T|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-6192_-7-6191delTC|p.?|188/7028|-7/5451||-6190|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+3001_134+3002delTC|p.?|241/3696|134/2100||3000|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+3001_134+3002delTC|p.?|247/7151|134/5655||3000|	GT:AD:DP:GQ	0/1:14:30:48
-17	41264743	.	CT	C	.	.	gnomad_exomes_an=30890;gnomad_exomes_hom=3155;gnomad_exomes_het=7228;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+2999delA|p.?|247/7088|134/5592||2998|,C|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-6194delA|p.?|188/7028|-7/5451||-6193|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+2999delA|p.?|241/3696|134/2100||2998|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+2999delA|p.?|247/7151|134/5655||2998|	GT:AD:DP:GQ:PID	0|1:14:29:48:41264739
-17	41264749	.	C	G	.	.	gnomad_exomes_an=30892;gnomad_exomes_hom=3135;gnomad_exomes_het=7223;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000256095;ANN=G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+2994G>C|p.?|247/7088|134/5592||2993|,G|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-6199G>C|p.?|188/7028|-7/5451||-6198|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+2994G>C|p.?|241/3696|134/2100||2993|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+2994G>C|p.?|247/7151|134/5655||2993|	GT:AD:DP:GQ:PID	0|1:14:29:48:41264739
-17	41264750	.	A	T	.	.	gnomad_exomes_an=30880;gnomad_exomes_hom=3136;gnomad_exomes_het=7219;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000255162;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+2993T>A|p.?|247/7088|134/5592||2992|,T|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-6200T>A|p.?|188/7028|-7/5451||-6199|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+2993T>A|p.?|241/3696|134/2100||2992|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+2993T>A|p.?|247/7151|134/5655||2992|	GT:AD:DP:GQ:PID	0|1:14:29:48:41264739
-17	41264751	.	A	AGGG	.	.	gnomad_exomes_an=30776;gnomad_exomes_hom=3136;gnomad_exomes_het=7222;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=AGGG|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+2991_134+2992insCCC|p.?|247/7088|134/5592||2991|,AGGG|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-6202_-7-6201insCCC|p.?|188/7028|-7/5451||-6201|,AGGG|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+2991_134+2992insCCC|p.?|241/3696|134/2100||2991|,AGGG|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+2991_134+2992insCCC|p.?|247/7151|134/5655||2991|	GT:AD:DP:GQ:PID	0|1:14:29:48:41264739
-17	41264753	.	C	T	.	.	gnomad_exomes_an=30714;gnomad_exomes_hom=3130;gnomad_exomes_het=7189;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000255582;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+2990G>A|p.?|247/7088|134/5592||2989|,T|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-6203G>A|p.?|188/7028|-7/5451||-6202|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+2990G>A|p.?|241/3696|134/2100||2989|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+2990G>A|p.?|247/7151|134/5655||2989|	GT:AD:DP:GQ:PID	0|1:14:27:48:41264739
-17	41264755	.	TGAAAC	T	.	.	gnomad_exomes_an=30768;gnomad_exomes_hom=3130;gnomad_exomes_het=7187;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+2983_134+2987delGTTTC|p.?|247/7088|134/5592||2982|,T|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-6210_-7-6206delGTTTC|p.?|188/7028|-7/5451||-6205|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+2983_134+2987delGTTTC|p.?|241/3696|134/2100||2982|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+2983_134+2987delGTTTC|p.?|247/7151|134/5655||2982|	GT:AD:DP:GQ:PID	0|1:14:27:48:41264739
+17	41264743	.	CT	C	.	.	gnomad_exomes_an=30890;gnomad_exomes_hom=3155;gnomad_exomes_het=7228;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+2999delA|p.?|247/7088|134/5592||2998|,C|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-6194delA|p.?|188/7028|-7/5451||-6193|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+2999delA|p.?|241/3696|134/2100||2998|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+2999delA|p.?|247/7151|134/5655||2998|	GT:AD:DP:GQ:PS	0|1:14:29:48:41264739
+17	41264749	.	C	G	.	.	gnomad_exomes_an=30892;gnomad_exomes_hom=3135;gnomad_exomes_het=7223;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000256095;ANN=G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+2994G>C|p.?|247/7088|134/5592||2993|,G|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-6199G>C|p.?|188/7028|-7/5451||-6198|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+2994G>C|p.?|241/3696|134/2100||2993|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+2994G>C|p.?|247/7151|134/5655||2993|	GT:AD:DP:GQ:PS	0|1:14:29:48:41264739
+17	41264750	.	A	T	.	.	gnomad_exomes_an=30880;gnomad_exomes_hom=3136;gnomad_exomes_het=7219;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000255162;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+2993T>A|p.?|247/7088|134/5592||2992|,T|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-6200T>A|p.?|188/7028|-7/5451||-6199|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+2993T>A|p.?|241/3696|134/2100||2992|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+2993T>A|p.?|247/7151|134/5655||2992|	GT:AD:DP:GQ:PS	0|1:14:29:48:41264739
+17	41264751	.	A	AGGG	.	.	gnomad_exomes_an=30776;gnomad_exomes_hom=3136;gnomad_exomes_het=7222;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=AGGG|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+2991_134+2992insCCC|p.?|247/7088|134/5592||2991|,AGGG|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-6202_-7-6201insCCC|p.?|188/7028|-7/5451||-6201|,AGGG|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+2991_134+2992insCCC|p.?|241/3696|134/2100||2991|,AGGG|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+2991_134+2992insCCC|p.?|247/7151|134/5655||2991|	GT:AD:DP:GQ:PS	0|1:14:29:48:41264739
+17	41264753	.	C	T	.	.	gnomad_exomes_an=30714;gnomad_exomes_hom=3130;gnomad_exomes_het=7189;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000255582;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+2990G>A|p.?|247/7088|134/5592||2989|,T|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-6203G>A|p.?|188/7028|-7/5451||-6202|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+2990G>A|p.?|241/3696|134/2100||2989|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+2990G>A|p.?|247/7151|134/5655||2989|	GT:AD:DP:GQ:PS	0|1:14:27:48:41264739
+17	41264755	.	TGAAAC	T	.	.	gnomad_exomes_an=30768;gnomad_exomes_hom=3130;gnomad_exomes_het=7187;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+2983_134+2987delGTTTC|p.?|247/7088|134/5592||2982|,T|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-6210_-7-6206delGTTTC|p.?|188/7028|-7/5451||-6205|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+2983_134+2987delGTTTC|p.?|241/3696|134/2100||2982|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+2983_134+2987delGTTTC|p.?|247/7151|134/5655||2982|	GT:AD:DP:GQ:PS	0|1:14:27:48:41264739
 17	41265776	.	A	G	.	.	gnomad_exomes_an=31332;gnomad_exomes_hom=1615;gnomad_exomes_het=6700;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191470;ANN=G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+1967T>C|p.?|247/7088|134/5592||1966|,G|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-7226T>C|p.?|188/7028|-7/5451||-7225|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+1967T>C|p.?|241/3696|134/2100||1966|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+1967T>C|p.?|247/7151|134/5655||1966|	GT:AD:DP:GQ	0/1:23:37:44
 17	41266407	.	C	CT	.	.	gnomad_exomes_an=22904;gnomad_exomes_hom=2326;gnomad_exomes_het=5197;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000255595;ANN=CT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+1335_134+1336insA|p.?|247/7088|134/5592||1335|,CT|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-7858_-7-7857insA|p.?|188/7028|-7/5451||-7857|,CT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+1335_134+1336insA|p.?|241/3696|134/2100||1335|,CT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+1335_134+1336insA|p.?|247/7151|134/5655||1335|	GT:AD:DP:GQ	0/1:10:18:33
 17	41267050	.	G	A	.	.	gnomad_exomes_an=31332;gnomad_exomes_hom=1619;gnomad_exomes_het=6726;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191477;ANN=A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+693C>T|p.?|247/7088|134/5592||692|,A|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-7-8500C>T|p.?|188/7028|-7/5451||-8499|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+693C>T|p.?|241/3696|134/2100||692|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+693C>T|p.?|247/7151|134/5655||692|	GT:AD:DP:GQ	0/1:7:23:44
 17	41267518	.	CA	C	.	.	gnomad_exomes_an=21564;gnomad_exomes_hom=937;gnomad_exomes_het=6113;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|3/22|c.134+224delT|p.?|247/7088|134/5592||223|,C|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-8+8515delT|p.?|187/7028|-8/5451||8514|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|3/21|c.134+224delT|p.?|241/3696|134/2100||223|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|3/23|c.134+224delT|p.?|247/7151|134/5655||223|	GT:AD:DP:GQ	0/1:11:19:35
-17	41268206	.	A	C	.	.	gnomad_exomes_an=31210;gnomad_exomes_hom=1544;gnomad_exomes_het=6707;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191483;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|2/22|c.81-410T>G|p.?|194/7088|81/5592||-409|,C|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-8+7828T>G|p.?|187/7028|-8/5451||7827|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|2/21|c.81-410T>G|p.?|188/3696|81/2100||-409|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|2/23|c.81-410T>G|p.?|194/7151|81/5655||-409|	GT:AD:DP:GQ:PID	0|1:13:22:46:41268206
-17	41268208	.	C	CT	.	.	gnomad_exomes_an=31128;gnomad_exomes_hom=1385;gnomad_exomes_het=6554;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000255730;ANN=CT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|2/22|c.81-413_81-412insA|p.?|194/7088|81/5592||-412|,CT|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-8+7825_-8+7826insA|p.?|187/7028|-8/5451||7825|,CT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|2/21|c.81-413_81-412insA|p.?|188/3696|81/2100||-412|,CT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|2/23|c.81-413_81-412insA|p.?|194/7151|81/5655||-412|	GT:AD:DP:GQ:PID	0|1:13:22:46:41268206
+17	41268206	.	A	C	.	.	gnomad_exomes_an=31210;gnomad_exomes_hom=1544;gnomad_exomes_het=6707;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191483;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|2/22|c.81-410T>G|p.?|194/7088|81/5592||-409|,C|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-8+7828T>G|p.?|187/7028|-8/5451||7827|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|2/21|c.81-410T>G|p.?|188/3696|81/2100||-409|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|2/23|c.81-410T>G|p.?|194/7151|81/5655||-409|	GT:AD:DP:GQ:PS	0|1:13:22:46:41268206
+17	41268208	.	C	CT	.	.	gnomad_exomes_an=31128;gnomad_exomes_hom=1385;gnomad_exomes_het=6554;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000255730;ANN=CT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|2/22|c.81-413_81-412insA|p.?|194/7088|81/5592||-412|,CT|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-8+7825_-8+7826insA|p.?|187/7028|-8/5451||7825|,CT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|2/21|c.81-413_81-412insA|p.?|188/3696|81/2100||-412|,CT|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|2/23|c.81-413_81-412insA|p.?|194/7151|81/5655||-412|	GT:AD:DP:GQ:PS	0|1:13:22:46:41268206
 17	41270229	.	T	G	.	.	gnomad_exomes_an=31274;gnomad_exomes_hom=1606;gnomad_exomes_het=6696;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191491;ANN=G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|2/22|c.81-2433A>C|p.?|194/7088|81/5592||-2432|,G|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-8+5805A>C|p.?|187/7028|-8/5451||5804|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|2/21|c.81-2433A>C|p.?|188/3696|81/2100||-2432|,G|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|2/23|c.81-2433A>C|p.?|194/7151|81/5655||-2432|	GT:AD:DP:GQ	0/1:7:24:40
 17	41270277	.	C	T	.	.	gnomad_exomes_an=31338;gnomad_exomes_hom=1513;gnomad_exomes_het=6416;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191493;ANN=T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|2/22|c.81-2481G>A|p.?|194/7088|81/5592||-2480|,T|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-8+5757G>A|p.?|187/7028|-8/5451||5756|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|2/21|c.81-2481G>A|p.?|188/3696|81/2100||-2480|,T|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|2/23|c.81-2481G>A|p.?|194/7151|81/5655||-2480|	GT:AD:DP:GQ	0/1:9:22:48
 17	41270463	.	G	A	.	.	gnomad_exomes_an=30876;gnomad_exomes_hom=1578;gnomad_exomes_het=6604;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;clinvar_clinsig=benign;clinvar_rcv=RCV000191497;ANN=A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|2/22|c.81-2667C>T|p.?|194/7088|81/5592||-2666|,A|5_prime_UTR_variant&intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|2/21|c.-8+5571C>T|p.?|187/7028|-8/5451||5570|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|2/21|c.81-2667C>T|p.?|188/3696|81/2100||-2666|,A|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|2/23|c.81-2667C>T|p.?|194/7151|81/5655||-2666|	GT:AD:DP:GQ	0/1:15:28:48
@@ -161,8 +161,8 @@ MT	3631	.	T	A	.	.	.	GT:GQ:AD:DP	0/1:20.17:5740:5893
 MT	3633	.	T	A	.	.	.	GT:GQ:AD:DP	0/1:10.82:5829:5943
 MT	4434	.	T	G	.	.	.	GT:GQ:AD:DP	0/1:0.79:7711:7878
 MT	4491	.	G	A	.	.	.	GT:GQ:AD:DP	0/1:14.25:6096:6108
-MT	4745	.	A	G	.	.	.	GT:GQ:AD:DP:PID	1|1:94.1:0:4255:4745
-MT	4769	.	A	G	.	.	.	GT:GQ:AD:DP:PID	1|1:96.49:0:4115:4745
+MT	4745	.	A	G	.	.	.	GT:GQ:AD:DP:PS	1|1:94.1:0:4255:4745
+MT	4769	.	A	G	.	.	.	GT:GQ:AD:DP:PS	1|1:96.49:0:4115:4745
 MT	6518	.	C	T	.	.	.	GT:GQ:AD:DP	0/1:21.4:9464:9504
 MT	7337	.	G	A	.	.	.	GT:GQ:AD:DP	1/1:93.49:2:8855
 MT	8129	.	A	C	.	.	.	GT:GQ:AD:DP	0/1:20.26:7971:8173
diff --git a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@example_dragen_07_021_624_3_10_4_vcf.snap b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@example_dragen_07_021_624_3_10_4_vcf.snap
index 46e482c3..e86161e4 100644
--- a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@example_dragen_07_021_624_3_10_4_vcf.snap
+++ b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@example_dragen_07_021_624_3_10_4_vcf.snap
@@ -20,7 +20,7 @@ expression: "std::fs::read_to_string(&args.path_out)?"
 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
+##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set">
 ##contig=<ID=1,length=249250621,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=2,length=243199373,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=3,length=198022430,assembly="GRCh37",species="Homo sapiens">
@@ -51,6 +51,6 @@ expression: "std::fs::read_to_string(&args.path_out)?"
 ##x-varfish-version=<ID=varfish-server-worker,Version="x.y.z">
 ##x-varfish-version=<ID=orig-caller,Name="Dragen",Version="SW: 07.021.624.3.10.4, HW: 07.021.624">
 #CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NA12878
-17	41256074	.	CA	C	.	.	gnomad_exomes_an=20150;gnomad_exomes_hom=2725;gnomad_exomes_het=5476;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+64delT|p.?|554/7088|441/5592||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+64delT|p.?|494/7028|300/5451||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+64delT|p.?|548/3696|441/2100||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+64delT|p.?|554/7151|441/5655||63|	GT:AD:DP:GQ:PID	0|1:11:17:43:41256074
+17	41256074	.	CA	C	.	.	gnomad_exomes_an=20150;gnomad_exomes_hom=2725;gnomad_exomes_het=5476;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+64delT|p.?|554/7088|441/5592||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+64delT|p.?|494/7028|300/5451||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+64delT|p.?|548/3696|441/2100||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+64delT|p.?|554/7151|441/5655||63|	GT:AD:DP:GQ:PS	0|1:11:17:43:41256074
 MT	750	.	A	G	.	.	.	GT:GQ:AD:DP	1/1:98.13:1:7819
 
diff --git a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@example_dragen_07_021_624_3_10_9_vcf.snap b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@example_dragen_07_021_624_3_10_9_vcf.snap
index b6a5dbb0..b8c53f53 100644
--- a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@example_dragen_07_021_624_3_10_9_vcf.snap
+++ b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@example_dragen_07_021_624_3_10_9_vcf.snap
@@ -20,7 +20,7 @@ expression: "std::fs::read_to_string(&args.path_out)?"
 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
+##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set">
 ##contig=<ID=1,length=249250621,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=2,length=243199373,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=3,length=198022430,assembly="GRCh37",species="Homo sapiens">
@@ -51,6 +51,6 @@ expression: "std::fs::read_to_string(&args.path_out)?"
 ##x-varfish-version=<ID=varfish-server-worker,Version="x.y.z">
 ##x-varfish-version=<ID=orig-caller,Name="Dragen",Version="SW: 07.021.624.3.10.9, HW: 07.021.624">
 #CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	CASE
-17	41256074	.	CA	C	.	.	gnomad_exomes_an=20150;gnomad_exomes_hom=2725;gnomad_exomes_het=5476;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+64delT|p.?|554/7088|441/5592||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+64delT|p.?|494/7028|300/5451||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+64delT|p.?|548/3696|441/2100||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+64delT|p.?|554/7151|441/5655||63|	GT:AD:DP:GQ:PID	0|1:18:32:47:41256074
+17	41256074	.	CA	C	.	.	gnomad_exomes_an=20150;gnomad_exomes_hom=2725;gnomad_exomes_het=5476;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+64delT|p.?|554/7088|441/5592||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+64delT|p.?|494/7028|300/5451||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+64delT|p.?|548/3696|441/2100||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+64delT|p.?|554/7151|441/5655||63|	GT:AD:DP:GQ:PS	0|1:18:32:47:41256074
 MT	750	.	A	G	.	.	.	GT:GQ:AD:DP	1/1:98.13:1:5608
 
diff --git a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@example_gatk_hc_3_7-0_vcf.snap b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@example_gatk_hc_3_7-0_vcf.snap
index aea06bdc..3399500d 100644
--- a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@example_gatk_hc_3_7-0_vcf.snap
+++ b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@example_gatk_hc_3_7-0_vcf.snap
@@ -20,7 +20,7 @@ expression: "std::fs::read_to_string(&args.path_out)?"
 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
+##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set">
 ##contig=<ID=1,length=249250621,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=2,length=243199373,assembly="GRCh37",species="Homo sapiens">
 ##contig=<ID=3,length=198022430,assembly="GRCh37",species="Homo sapiens">
diff --git a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@example_gatk_hc_4_4_0_0_vcf.snap b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@example_gatk_hc_4_4_0_0_vcf.snap
new file mode 100644
index 00000000..0a627942
--- /dev/null
+++ b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test@example_gatk_hc_4_4_0_0_vcf.snap
@@ -0,0 +1,56 @@
+---
+source: src/seqvars/ingest/mod.rs
+expression: "std::fs::read_to_string(&args.path_out)?"
+---
+##fileformat=VCFv4.4
+##INFO=<ID=gnomad_exomes_an,Number=1,Type=Integer,Description="Number of samples in gnomAD exomes">
+##INFO=<ID=gnomad_exomes_hom,Number=1,Type=Integer,Description="Number of hom. alt. carriers in gnomAD exomes">
+##INFO=<ID=gnomad_exomes_het,Number=1,Type=Integer,Description="Number of het. alt. carriers in gnomAD exomes">
+##INFO=<ID=gnomad_exomes_hemi,Number=1,Type=Integer,Description="Number of hemi. alt. carriers in gnomAD exomes">
+##INFO=<ID=gnomad_genomes_an,Number=1,Type=Integer,Description="Number of samples in gnomAD genomes">
+##INFO=<ID=gnomad_genomes_hom,Number=1,Type=Integer,Description="Number of hom. alt. carriers in gnomAD genomes">
+##INFO=<ID=gnomad_genomes_het,Number=1,Type=Integer,Description="Number of het. alt. carriers in gnomAD genomes">
+##INFO=<ID=gnomad_genomes_hemi,Number=1,Type=Integer,Description="Number of hemi. alt. carriers in gnomAD genomes">
+##INFO=<ID=helix_an,Number=1,Type=Integer,Description="Number of samples in HelixMtDb">
+##INFO=<ID=helix_hom,Number=1,Type=Integer,Description="Number of hom. alt. carriers in HelixMtDb">
+##INFO=<ID=helix_het,Number=1,Type=Integer,Description="Number of het. alt. carriers in HelixMtDb">
+##INFO=<ID=ANN,Number=.,Type=String,Description="Functional annotations: 'Allele | Annotation | Annotation_Impact | Gene_Name | Gene_ID | Feature_Type | Feature_ID | Transcript_BioType | Rank | HGVS.c | HGVS.p | cDNA.pos / cDNA.length | CDS.pos / CDS.length | AA.pos / AA.length | Distance | ERRORS / WARNINGS / INFO'">
+##FILTER=<ID=PASS,Description="All filters passed">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set">
+##contig=<ID=1,length=249250621,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=2,length=243199373,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=3,length=198022430,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=4,length=191154276,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=5,length=180915260,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=6,length=171115067,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=7,length=159138663,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=8,length=146364022,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=9,length=141213431,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=10,length=135534747,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=11,length=135006516,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=12,length=133851895,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=13,length=115169878,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=14,length=107349540,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=15,length=102531392,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=16,length=90354753,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=17,length=81195210,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=18,length=78077248,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=19,length=59128983,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=20,length=63025520,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=21,length=48129895,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=22,length=51304566,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=X,length=155270560,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=Y,length=59373566,assembly="GRCh37",species="Homo sapiens">
+##contig=<ID=MT,length=16569,assembly="GRCh37",species="Homo sapiens">
+##SAMPLE=<ID=CASE,Sex="Male",Disease="Affected">
+##PEDIGREE=<ID=CASE>
+##x-varfish-version=<ID=varfish-server-worker,Version="x.y.z">
+##x-varfish-version=<ID=orig-caller,Name="GatkHaplotypeCaller",Version="4.4.0.0">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	CASE
+17	41256074	.	CA	C	.	.	gnomad_exomes_an=20150;gnomad_exomes_hom=2725;gnomad_exomes_het=5476;gnomad_genomes_an=0;gnomad_genomes_hom=0;gnomad_genomes_het=0;ANN=C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007294.4|Coding|6/22|c.441+64delT|p.?|554/7088|441/5592||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007297.4|Coding|5/21|c.300+64delT|p.?|494/7028|300/5451||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007299.4|Coding|6/21|c.441+64delT|p.?|548/3696|441/2100||63|,C|intron_variant|MODIFIER|BRCA1|HGNC:1100|transcript|NM_007300.4|Coding|6/23|c.441+64delT|p.?|554/7151|441/5655||63|	GT:AD:DP:GQ:PS	1|1:0:80:99:41256074
+MT	750	.	A	G	.	.	.	GT:AD:DP:GQ	1/1:0:35:99
+
diff --git a/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test_gz.snap b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test_gz.snap
new file mode 100644
index 00000000..5fa7e8b1
--- /dev/null
+++ b/src/seqvars/ingest/snapshots/varfish_server_worker__seqvars__ingest__test__result_snapshot_test_gz.snap
@@ -0,0 +1,514 @@
+---
+source: src/seqvars/ingest/mod.rs
+expression: "String::from_utf8_lossy(&buffer)"
+---
+0000: 1F 8B 08 00 00 00 00 00 00 FF CD 9D 59 73 1B 47  ............Ys.G
+0016: 92 80 9F 39 BF 82 21 47 EC 3C 48 84 EA 3E A0 A5  ...9..!G.<H..>..
+0032: 36 30 A4 0C 2B D6 92 35 14 C6 B3 FB 84 A0 69 58  60..+..5......iX
+0048: 62 8C 48 6A 49 DA 6B 6F E0 C7 6F D6 D5 E8 23 AB  b.HjI.ko..o...#.
+0064: 41 B2 AB 3B AC 19 A9 61 F4 91 59 59 5F 25 B2 B2  A..;...a..YY_%..
+0080: 8E FE E6 9B 5F 2E BF 6C 7E B9 B9 BD 3A BF 3F FE  ...._..l~...:.?.
+0096: F1 E4 DB DF C4 4C FC E5 9B 6F DE BE FF F6 87 E3  .....L...o......
+0112: 7F 7F 7B 7A FC E9 FA E6 EA FC E7 F5 E6 F7 9B AB  ..{z............
+0128: CD DD FA FC FA C5 FB 5F AF 7E DA DC 1E D3 17 AB  ......._.~......
+0144: 3F BE 6E 8E DF 5E DF 6F 3E 6D 6E 5F 9C 6E EE 2E  ?.n..^.o>mn_.n..
+0160: 6E 2F BF DE 5F DE 5C 1F 3F 0B 97 1C DE FC 72 78  n/.._.\.?.....rx
+0176: 77 7E F5 F5 CB E6 EE F0 F2 FA D0 3D 68 71 7A 18  w~.........=hqz.
+0192: 1E F4 EC 75 5E C6 E7 9B AB C7 09 81 1B 66 87 E7  ...u^........f..
+0208: 5F EE 67 87 17 E7 B7 B7 97 9B DB 47 CA DB DC 3F  _.g........G...?
+0224: 52 DE E6 7E 98 BC AB CB C7 0A BC BA 7C 92 C4 4F  R..~........|..O
+0240: 9B EB 42 D5 16 9F D4 2B A5 6C C5 3D 48 62 D1 AA  ..B....+.l.=Hb..
+0256: 7B 98 C4 B2 95 87 CA FC BC F9 72 F9 FB 90 4A FB  {.........r...J.
+0272: CE 3D E0 DD FD E9 4F D8 73 0B 55 53 BF 8C 32 15  .=....O.s.US..2.
+0288: 93 91 B1 78 FF 3E 3D 7D 16 9E FE F1 FE F6 F2 FA  ...x.>=}........
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+0320: B9 3F 77 FF 71 37 3F FC EB E2 CB 97 CD 97 CD E1  .?w.q7?.........
+0336: F6 70 51 7D DD F8 8F F5 DB AB AF E7 17 F7 F0 DD  .pQ}............
+0352: 72 73 BD 59 BF 3F BF DA A4 CF 6F 4F E1 D3 B7 9B  rs.Y.?....oO....
+0368: F3 FB 5F 6F 37 6B 27 B9 F6 9F FE DC EA F6 FC 3A  .._o7k'........:
+0384: E8 B0 FE DB E5 4D BC E2 EC FC FA 5F 70 F8 6E F9  .....M....._p.n.
+0400: E3 C7 D9 45 FA F0 15 3E 5C 9C BE 5F CC BE DE DC  ...E...>\.._....
+0416: 1D BE 0C 1F BF 6C AE 3F DD 7F 86 13 27 A7 1F E3  .....l.?....'...
+0432: F7 EE 53 F5 F5 22 5D BD A8 5D 7B 7A 79 77 7F 7E  ..S.."]..]{zyw.~
+0448: 7D E1 04 BD 39 3B FB E1 EC 23 9C FF E7 E2 EC FD  }...9;...#......
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+0480: CC 5B F0 C3 E2 E3 C7 A6 B5 C0 28 87 F0 4B 70 EF  .[........(..Kp.
+0496: 2C FF F5 FC EE 6E F3 73 B8 E7 87 B3 77 8B 55 B0  ,....n.s....w.U.
+0512: FA 69 32 FA 59 4F 95 9E 6D CE 7F 3E FC 79 F3 15  .i2.YO..m..>.y..
+0528: 54 83 1F 95 C3 CD F9 C5 67 A8 57 67 F0 F6 F3 4E  T.......g.Wg...N
+0544: 3F 3C 04 91 DD F3 DA F7 2F FF FE 90 FB 4F 6E AE  ?<....../....On.
+0560: 7F BE 8C 18 B8 C6 76 EF AA E4 7F 7E 3D FF 72 79  ......v....~=.ry
+0576: FF 47 E7 89 AB D6 13 31 AC 96 F1 21 ED 9B 3F 7C  .G.....1...!..?|
+0592: 7C 88 3A 1F 3E 9F DF 6D 0E EF 36 F7 FE F6 8B 9B  |.:.>..m..6.....
+0608: EB FB CB 4F FE 76 FA 22 54 E8 31 13 96 49 A2 18  ...O.v."T.1..I..
+0624: 7D E1 6A E1 EA A7 2F 7F 80 CC B3 93 CF 5C 3F 7B  }.j.../......\?{
+0640: 71 F7 75 73 71 B9 B9 3B 7E F6 DD CD D5 0D 34 F8  q.usq..;~.....4.
+0656: AF 97 9B EB BB F6 93 D8 EE 49 9C 5A CB 35 7F EA  .........I.Z.5..
+0672: 93 78 7A 12 B5 86 30 78 1C 79 EA 93 C4 EE 49 94  .xz...0x.y....I.
+0688: 4A C1 B4 7A EA 93 64 F5 24 43 2C 95 4C 3D 59 27  J..z..d.$C,.L=Y'
+0704: 55 3D 49 53 50 8A 28 FD D4 27 E9 EA 49 D2 52 6E  U=ISP.(..'..I.Rn
+0720: 94 7A B2 C5 4D F5 24 A1 B8 12 60 F4 A7 3E C9 EE  .z..M.$...`..>..
+0736: 9E 44 19 E5 80 C2 53 9F 44 49 F5 28 2E 25 17 5A  .D....S.DI.(.%.Z
+0752: 3C D9 50 94 D6 1E 45 88 92 F4 C9 1C 50 B6 7B 14  <.P...E.....P.{.
+0768: 37 92 1A 2B 9F FC A8 1D E7 14 34 B2 46 9B 27 3F  7..+......4.F.'?
+0784: 6A 07 3A D1 5C 58 29 9E 8C 27 DD 91 4E 98 E4 94  j.:.\X)..'..N...
+0800: DB 27 B3 40 2B D4 2D E1 52 68 F9 64 3E 69 85 BA  .'.@+.-.Rh.d>i..
+0816: A1 D4 4A 46 9F 5E BC 0A 75 6D 88 D6 4C 3C DD E6  ..JF.^..um..L<..
+0832: 15 EA D0 FA 98 B1 E6 C9 A5 63 15 E9 8A 83 CD 25  .........c.....%
+0848: 7B 72 E9 58 05 BA 30 94 D9 01 70 B2 8A 73 49 39  {r.X..0...p..sI9
+0864: 11 52 3D B9 C5 FC D7 CE 4B 49 A6 89 7C BA E7 FC  .R=.....KI..|...
+0880: EF 9D C1 E1 D7 65 80 4A EF 56 95 4E 4A 2A FB A8  .....e.J.V.NJ*..
+0896: C7 7C 5C BC FB F0 FD 1B FF 98 F7 0B A8 77 68 B4  .|\..........wh.
+0912: 1F 37 BF 43 D8 B7 B9 3A 87 60 E3 05 84 45 1B F8  .7.C...:.`...E..
+0928: AD 85 C8 E6 97 5F 36 17 F7 31 9E F9 F0 E6 F4 ED  ....._6..1......
+0944: F2 EC 4D E3 3E F7 FD EF 47 BF 9D DF FE 72 79 F7  ..M.>...G....ry.
+0960: F9 E8 37 88 80 DC 4F B5 BB 20 7D 77 B7 B9 85 AF  ..7...O...}w....
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diff --git a/tests/seqvars/ingest/NA12878_dragen.vcf.gz b/tests/seqvars/ingest/NA12878_dragen.vcf.gz
new file mode 100644
index 00000000..790d8fe6
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diff --git a/tests/seqvars/ingest/NA12878_dragen.vcf.gz.tbi b/tests/seqvars/ingest/NA12878_dragen.vcf.gz.tbi
new file mode 100644
index 00000000..67cfae88
Binary files /dev/null and b/tests/seqvars/ingest/NA12878_dragen.vcf.gz.tbi differ