diff --git a/tests/seqvars/ingest/example_dragen_chrmt.vcf b/tests/seqvars/ingest/example_dragen_chrmt.vcf
new file mode 100644
index 00000000..8159958d
--- /dev/null
+++ b/tests/seqvars/ingest/example_dragen_chrmt.vcf
@@ -0,0 +1,144 @@
+##fileformat=VCFv4.2
+##FILTER=<ID=PASS,Description="All filters passed">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths (counting only informative reads out of the total reads) for the ref and alt alleles in the order listed">
+##FORMAT=<ID=AF,Number=A,Type=Float,Description="Allele fractions for alt alleles in the order listed">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
+##FORMAT=<ID=DN,Number=1,Type=String,Description="Possible values are 'Inherited', 'DeNovo' or 'LowDQ'. Threshold for passing de novo call: SNPs: 0.05, INDELs: 0.02">
+##FORMAT=<ID=DPL,Number=.,Type=Integer,Description="Normalized, Phred-scaled likelihoods used for DQ calculation">
+##FORMAT=<ID=DQ,Number=1,Type=Float,Description="De novo quality">
+##FORMAT=<ID=F1R2,Number=R,Type=Integer,Description="Count of reads in F1R2 pair orientation supporting each allele">
+##FORMAT=<ID=F2R1,Number=R,Type=Integer,Description="Count of reads in F2R1 pair orientation supporting each allele">
+##FORMAT=<ID=FT,Number=1,Type=String,Description="Sample filter, 'PASS' indicates that all filters have passed for this sample">
+##FORMAT=<ID=GP,Number=G,Type=Float,Description="Phred-scaled posterior probabilities for genotypes as defined in the VCF specification">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum DP observed within the GVCF block">
+##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
+##FORMAT=<ID=PP,Number=G,Type=Integer,Description="Phred-scaled posterior genotype probabilities using pedigree prior probabilities">
+##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
+##FORMAT=<ID=SQ,Number=A,Type=Float,Description="Somatic quality">
+##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
+##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
+##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (informative and non-informative); some reads may have been filtered based on mapq etc.">
+##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
+##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
+##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
+##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
+##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
+##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
+##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
+##INFO=<ID=FractionInformativeReads,Number=1,Type=Float,Description="The fraction of informative reads out of the total reads">
+##FILTER=<ID=DRAGENSnpHardQUAL,Description="Set if true:QUAL < 10.41">
+##FILTER=<ID=DRAGENIndelHardQUAL,Description="Set if true:QUAL < 7.83">
+##FILTER=<ID=LowDepth,Description="Set if true:DP <= 1">
+##FILTER=<ID=PloidyConflict,Description="Genotype call from variant caller not consistent with chromosome ploidy">
+##FILTER=<ID=DRAGENHardQUAL,Description="Set if true:QUAL < 10.4139">
+##FILTER=<ID=LowGQ,Description="Set if true:GQ = 0">
+##FILTER=<ID=lod_fstar,Description="Variant does not meet likelihood threshold (default threshold is 6.3)">
+##FILTER=<ID=base_quality,Description="Site filtered because median base quality of alt reads at this locus does not meet threshold">
+##FILTER=<ID=filtered_reads,Description="Site filtered because too large a fraction of reads have been filtered out">
+##FILTER=<ID=fragment_length,Description="Site filtered because absolute difference between the median fragment length of alt reads and median fragment length of ref reads at this locus exceeds threshold">
+##FILTER=<ID=low_depth,Description="Site filtered because the read depth is too low">
+##FILTER=<ID=low_frac_info_reads,Description="Site filtered because the fraction of informative reads is below threshold">
+##FILTER=<ID=low_normal_depth,Description="Site filtered because the normal sample read depth is too low">
+##FILTER=<ID=long_indel,Description="Site filtered because the indel length is too long">
+##FILTER=<ID=mapping_quality,Description="Site filtered because median mapping quality of alt reads at this locus does not meet threshold">
+##FILTER=<ID=multiallelic,Description="Site filtered because more than two alt alleles pass tumor LOD">
+##FILTER=<ID=non_homref_normal,Description="Site filtered because the normal sample genotype is not homozygous reference">
+##FILTER=<ID=no_reliable_supporting_read,Description="Site filtered because no reliable supporting somatic read exists">
+##FILTER=<ID=panel_of_normals,Description="Seen in at least one sample in the panel of normals vcf">
+##FILTER=<ID=read_position,Description="Site filtered because median of distances between start/end of read and this locus is below threshold">
+##FILTER=<ID=RMxNRepeatRegion,Description="Site filtered because all or part of the variant allele is a repeat of the reference">
+##FILTER=<ID=str_contraction,Description="Site filtered due to suspected PCR error where the alt allele is one repeat unit less than the reference">
+##FILTER=<ID=too_few_supporting_reads,Description="Site filtered because there are too few supporting reads in the tumor sample">
+##FILTER=<ID=weak_evidence,Description="Somatic variant score does not meet threshold">
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+##reference=file:///staging/human/reference/hs37d5/hs37d5.fa.k_21.f_16.m_149/reference.bin
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	INDEX	PARENT_B	PARENT_A
+MT	73	.	A	G	.	PASS	DP=7407;MQ=229.88	GT:AD:AF:DP:FT:SQ:F1R2:F2R1	0/0:2831,6:0.002:1919:PASS:99:.:.	1/1:0,2032:1:2032:PASS:98.13:0,921:0,1111	0/0:4731,17:0.004:3115:PASS:99:.:.
diff --git a/tests/seqvars/ingest/example_gatk_hc.vcf b/tests/seqvars/ingest/example_gatk_hc.vcf
new file mode 100644
index 00000000..9a7cdb21
--- /dev/null
+++ b/tests/seqvars/ingest/example_gatk_hc.vcf
@@ -0,0 +1,234 @@
+##fileformat=VCFv4.2
+##FILTER=<ID=PASS,Description="All filters passed">
+##FILTER=<ID=LowQual,Description="Low quality">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
+##GATKCommandLine.HaplotypeCaller=<ID=HaplotypeCaller,Version=3.7-0-gcfedb67,Date="Fri Aug 26 20:52:06 CEST 2022",Epoch=1661539926702,CommandLineOptions="analysis_type=HaplotypeCaller input_file=[/fast/work/groups/cubi/projects/2022-07-06_VarFish_Course_Data/snappy-processing/ngs_mapping/work/bwa.Case_1_index-N1-DNA1-WGS1/out/bwa.Case_1_index-N1-DNA1-WGS1.bam, /fast/work/groups/cubi/projects/2022-07-06_VarFish_Course_Data/snappy-processing/ngs_mapping/work/bwa.Case_1_father-N1-DNA1-WGS1/out/bwa.Case_1_father-N1-DNA1-WGS1.bam, /fast/work/groups/cubi/projects/2022-07-06_VarFish_Course_Data/snappy-processing/ngs_mapping/work/bwa.Case_1_mother-N1-DNA1-WGS1/out/bwa.Case_1_mother-N1-DNA1-WGS1.bam] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=[1:1-5,010,000] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/fast/projects/cubit/current/static_data/reference/GRCh37/hs37d5/hs37d5.fa nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=500 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false out=/data/gpfs-1/users/holtgrem_c/scratch/tmp/tmp.uG5Q6d0QYe/tmp.vcf.gz likelihoodCalculationEngine=PairHMM heterogeneousKmerSizeResolution=COMBO_MIN dbsnp=(RodBinding name=dbsnp source=/fast/projects/cubit/current/static_data/db/dbSNP/b147/GRCh37/All_20160408.vcf.gz) dontTrimActiveRegions=false maxDiscARExtension=25 maxGGAARExtension=300 paddingAroundIndels=150 paddingAroundSNPs=20 comp=[] annotation=[] excludeAnnotation=[] group=[StandardAnnotation, StandardHCAnnotation] debug=false useFilteredReadsForAnnotations=false emitRefConfidence=NONE bamOutput=null bamWriterType=CALLED_HAPLOTYPES emitDroppedReads=false disableOptimizations=false annotateNDA=false useNewAFCalculator=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 heterozygosity_stdev=0.01 standard_min_confidence_threshold_for_calling=10.0 standard_min_confidence_threshold_for_emitting=30.0 max_alternate_alleles=6 max_genotype_count=1024 max_num_PL_values=100 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.0 contamination_fraction_per_sample_file=null p_nonref_model=null exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=false gcpHMM=10 pair_hmm_implementation=VECTOR_LOGLESS_CACHING pair_hmm_sub_implementation=ENABLE_ALL always_load_vector_logless_PairHMM_lib=false phredScaledGlobalReadMismappingRate=45 noFpga=false sample_name=null kmerSize=[10, 25] dontIncreaseKmerSizesForCycles=false allowNonUniqueKmersInRef=false numPruningSamples=1 recoverDanglingHeads=false doNotRecoverDanglingBranches=false minDanglingBranchLength=4 consensus=false maxNumHaplotypesInPopulation=128 errorCorrectKmers=false minPruning=3 debugGraphTransformations=false allowCyclesInKmerGraphToGeneratePaths=false graphOutput=null kmerLengthForReadErrorCorrection=25 minObservationsForKmerToBeSolid=20 GVCFGQBands=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 70, 80, 90, 99] indelSizeToEliminateInRefModel=10 min_base_quality_score=10 includeUmappedReads=false useAllelesTrigger=false doNotRunPhysicalPhasing=true keepRG=null justDetermineActiveRegions=false dontGenotype=false dontUseSoftClippedBases=false captureAssemblyFailureBAM=false errorCorrectReads=false pcr_indel_model=CONSERVATIVE maxReadsInRegionPerSample=10000 minReadsPerAlignmentStart=10 mergeVariantsViaLD=false activityProfileOut=null activeRegionOut=null activeRegionIn=null activeRegionExtension=null forceActive=false activeRegionMaxSize=null bandPassSigma=null maxReadsInMemoryPerSample=30000 maxTotalReadsInMemory=10000000 maxProbPropagationDistance=50 activeProbabilityThreshold=0.002 min_mapping_quality_score=20 filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
+##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
+##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
+##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
+##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
+##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
+##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
+##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
+##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
+##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
+##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
+##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
+##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
+##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
+##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
+##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
+##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
+##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
+##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
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job_out.664.d/out/tmp_664.vcf.gz job_out.665.d/out/tmp_665.vcf.gz job_out.666.d/out/tmp_666.vcf.gz job_out.667.d/out/tmp_667.vcf.gz job_out.668.d/out/tmp_668.vcf.gz job_out.669.d/out/tmp_669.vcf.gz job_out.670.d/out/tmp_670.vcf.gz job_out.671.d/out/tmp_671.vcf.gz job_out.672.d/out/tmp_672.vcf.gz job_out.673.d/out/tmp_673.vcf.gz job_out.674.d/out/tmp_674.vcf.gz job_out.675.d/out/tmp_675.vcf.gz job_out.676.d/out/tmp_676.vcf.gz job_out.677.d/out/tmp_677.vcf.gz job_out.678.d/out/tmp_678.vcf.gz job_out.679.d/out/tmp_679.vcf.gz job_out.680.d/out/tmp_680.vcf.gz job_out.681.d/out/tmp_681.vcf.gz job_out.682.d/out/tmp_682.vcf.gz job_out.683.d/out/tmp_683.vcf.gz job_out.684.d/out/tmp_684.vcf.gz job_out.685.d/out/tmp_685.vcf.gz job_out.686.d/out/tmp_686.vcf.gz job_out.687.d/out/tmp_687.vcf.gz job_out.688.d/out/tmp_688.vcf.gz job_out.689.d/out/tmp_689.vcf.gz job_out.690.d/out/tmp_690.vcf.gz job_out.691.d/out/tmp_691.vcf.gz job_out.692.d/out/tmp_692.vcf.gz; Date=Fri Aug 26 22:36:04 2022
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	Case_1_father-N1-DNA1-WGS1	Case_1_index-N1-DNA1-WGS1	Case_1_mother-N1-DNA1-WGS1
+17	41190140	rs34738736	A	AAC	1546.86	.	AC=3;AF=0.5;AN=6;BaseQRankSum=-1.671;ClippingRankSum=0;DB;DP=125;ExcessHet=1.549;FS=1.566;MLEAC=3;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.42;ReadPosRankSum=-0.91;SOR=0.624	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1248,120,0	0/1:16,14:30:99:344,0,411	0/0:33,0:33:99:0,100,1042
+17	41197784	rs41293465	G	A	1024.16	.	AC=2;AF=0.333;AN=6;BaseQRankSum=1.294;ClippingRankSum=0;DB;DP=103;ExcessHet=3.9794;FS=3.902;MLEAC=2;MLEAF=0.333;MQ=60;MQRankSum=0;QD=15.76;ReadPosRankSum=0.499;SOR=1.169	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1309	0/1:10,16:26:99:478,0,279	0/1:19,20:39:99:578,0,543
+17	41199002	rs8176313	C	T	584.13	.	AC=1;AF=0.167;AN=6;BaseQRankSum=-0.198;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=3.013;MLEAC=1;MLEAF=0.167;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=-1.018;SOR=0.59	GT:AD:DP:GQ:PL	0/1:22,23:45:99:615,0,620	0/0:39,0:39:99:0,117,1301	0/0:50,0:50:99:0,150,1698
+17	41204797	rs562562021	A	AAC	447.12	.	AC=2;AF=0.333;AN=6;BaseQRankSum=1.369;ClippingRankSum=0;DB;DP=95;ExcessHet=3.9794;FS=1.061;MLEAC=2;MLEAF=0.333;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=1.522;SOR=0.882	GT:AD:DP:GQ:PL	0/0:20,0:20:61:0,61,741	0/1:7,9:16:99:216,0,265	0/1:13,13:26:99:272,0,508
+17	41204834	rs761604604	ACACACACT	A	467.09	.	AC=1;AF=0.167;AN=6;BaseQRankSum=-1.241;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=6.894;MLEAC=1;MLEAF=0.167;MQ=60;MQRankSum=0;QD=17.97;ReadPosRankSum=1.943;SOR=0.442	GT:AD:DP:GQ:PL	0/0:22,0:22:65:0,65,988	0/0:20,0:20:60:0,60,860	0/1:13,13:26:99:507,0,506
+17	41204840	rs781493445	ACT	A	340.12	.	AC=2;AF=0.333;AN=6;BaseQRankSum=-3.187;ClippingRankSum=0;DB;DP=86;ExcessHet=3.9794;FS=2.485;MLEAC=2;MLEAF=0.333;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=1.28;SOR=0.354	GT:AD:DP:GQ:PL	0/1:8,11:19:99:242,0,162	0/1:10,7:17:99:139,0,399	0/0:26,0:26:79:0,79,1171
+17	41204842	rs9897397	T	A	732.92	.	AC=3;AF=0.5;AN=6;BaseQRankSum=0;ClippingRankSum=0;DB;DP=86;ExcessHet=6.9897;FS=7.31;MLEAC=3;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=-1.221;SOR=1.744	GT:AD:DP:GQ:PL	0/1:12,8:20:99:157,0,263	0/1:7,10:17:99:296,0,140	0/1:13,11:24:99:310,0,513
+17	41204856	rs17671533	G	A	1274.9	.	AC=3;AF=0.5;AN=6;BaseQRankSum=0.447;ClippingRankSum=0;DB;DP=88;ExcessHet=1.549;FS=5.934;MLEAC=3;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.77;ReadPosRankSum=0.786;SOR=1.453	GT:AD:DP:GQ:PL	1/1:0,33:33:98:1087,98,0	0/1:14,9:23:99:224,0,383	0/0:31,0:31:93:0,93,1028
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+17	41213748	rs8176267	T	C	2167.9	.	AC=3;AF=0.5;AN=6;BaseQRankSum=-1.332;ClippingRankSum=0;DB;DP=128;ExcessHet=1.549;FS=2.252;MLEAC=3;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.44;ReadPosRankSum=-0.058;SOR=0.674	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1656,144,0	0/1:15,19:34:99:548,0,419	0/0:45,0:45:99:0,135,1564
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+17	41219907	rs772731581	T	TA	594.88	.	AC=6;AF=1;AN=6;BaseQRankSum=-0.337;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=6;MLEAF=1;MQ=60;MQRankSum=0;QD=18.03;ReadPosRankSum=0.578;SOR=0.412	GT:AD:DP:GQ:PL	1/1:0,12:12:36:239,36,0	1/1:0,9:9:27:179,27,0	1/1:1,11:12:20:212,20,0
+17	41224892	rs533819030	G	GT	1094.86	.	AC=3;AF=0.5;AN=6;BaseQRankSum=-0.974;ClippingRankSum=0;DB;DP=122;ExcessHet=1.549;FS=0.793;MLEAC=3;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.87;ReadPosRankSum=-0.934;SOR=0.878	GT:AD:DP:GQ:PL	1/1:0,33:33:98:833,98,0	0/1:19,17:36:99:307,0,356	0/0:31,0:31:93:0,93,758
+17	41225176	rs148436838	C	T	1453.16	.	AC=2;AF=0.333;AN=6;BaseQRankSum=1.917;ClippingRankSum=0;DB;DP=139;ExcessHet=3.9794;FS=4.187;MLEAC=2;MLEAF=0.333;MQ=60;MQRankSum=0;QD=15.14;ReadPosRankSum=0.063;SOR=1.049	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1440	0/1:23,24:47:99:693,0,626	0/1:22,27:49:99:792,0,593
+17	41229777	rs11368665	G	GT	3992.86	.	AC=6;AF=1;AN=6;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=6;MLEAF=1;MQ=59.93;QD=33.55;SOR=1.297	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1476,132,0	1/1:0,33:33:99:1110,99,0	1/1:0,42:42:99:1442,129,0
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+17	41238126	rs60834728	T	TAC	265.09	.	AC=1;AF=0.167;AN=6;BaseQRankSum=-2.133;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=4.217;MLEAC=1;MLEAF=0.167;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=0.069;SOR=0.779	GT:AD:DP:GQ:PL	0/0:26,0:26:78:0,78,723	0/0:28,0:28:84:0,84,783	0/1:13,14:27:99:305,0,281
+17	41238969	rs150347361	G	C	460.13	.	AC=1;AF=0.167;AN=6;BaseQRankSum=-0.255;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=7.156;MLEAC=1;MLEAF=0.167;MQ=60;MQRankSum=0;QD=15.34;ReadPosRankSum=1.315;SOR=1.302	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1475	0/0:35,0:35:99:0,105,1197	0/1:13,17:30:99:491,0,362
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+17	41252332	rs781576075	T	C	945.16	.	AC=2;AF=0.333;AN=6;BaseQRankSum=-0.53;ClippingRankSum=0;DB;DP=93;ExcessHet=3.9794;FS=0.806;MLEAC=2;MLEAF=0.333;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=1.905;SOR=0.557	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,849	0/1:14,14:28:99:392,0,403	0/1:19,21:40:99:585,0,539
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+MT	11204	rs201803443	T	C	183666	.	AC=4;AF=0.667;AN=6;BaseQRankSum=6.514;ClippingRankSum=-0.015;DB;DP=8553;ExcessHet=0.4576;FS=0;MLEAC=4;MLEAF=0.667;MQ=59.96;MQRankSum=2.593;QD=34.39;ReadPosRankSum=-6.507;SOR=0.665	GT:AD:DP:GQ:PL	0/0:3168,5:3173:99:0,9411,106928	1/1:0,2922:2922:99:100296,8776,0	1/1:0,2418:2418:99:83408,7267,0
+MT	11674	rs28358286	C	T	167026	.	AC=4;AF=0.667;AN=6;BaseQRankSum=2.538;ClippingRankSum=-0.016;DB;DP=7754;ExcessHet=0.4576;FS=0;MLEAC=4;MLEAF=0.667;MQ=58.56;MQRankSum=-26.225;QD=34.47;ReadPosRankSum=-6.727;SOR=0.689	GT:AD:DP:GQ:PL	0/0:2890,0:2890:99:0,8678,99225	1/1:0,2666:2666:99:91850,8010,0	1/1:1,2179:2180:99:75214,6545,0
+MT	11719	rs2853495	G	A	181704	.	AC=4;AF=0.667;AN=6;BaseQRankSum=2.012;ClippingRankSum=-0.016;DB;DP=8621;ExcessHet=0.4576;FS=1.122;MLEAC=4;MLEAF=0.667;MQ=58.72;MQRankSum=-26.852;QD=34.58;ReadPosRankSum=-2.878;SOR=0.775	GT:AD:DP:GQ:PL	0/0:3339,2:3341:99:0,9993,114829	1/1:0,3052:3052:99:105503,9166,0	1/1:0,2203:2203:99:76239,6625,0
+MT	11947	rs28359168	A	G	138146	.	AC=4;AF=0.667;AN=6;BaseQRankSum=-6.069;ClippingRankSum=-0.011;DB;DP=6674;ExcessHet=0.4576;FS=0;MLEAC=4;MLEAF=0.667;MQ=59.99;MQRankSum=1.198;QD=33.88;ReadPosRankSum=-3.658;SOR=0.672	GT:AD:DP:GQ:PL	0/0:2579,2:2581:99:0,7727,88892	1/1:0,2273:2273:99:77242,6825,0	1/1:0,1804:1804:99:60942,5416,0
+MT	12414	rs193302950	T	C	147603	.	AC=4;AF=0.667;AN=6;BaseQRankSum=10.932;ClippingRankSum=-0.001;DB;DP=7160;ExcessHet=0.4576;FS=0;MLEAC=4;MLEAF=0.667;MQ=60;MQRankSum=-0.001;QD=34.49;ReadPosRankSum=0.393;SOR=0.65	GT:AD:DP:GQ:PL	0/0:2852,3:2855:99:0,8482,95556	1/1:1,2545:2546:99:87714,7616,0	1/1:0,1733:1733:99:59927,5208,0
+MT	12648	.	A	G	117695	.	AC=4;AF=0.667;AN=6;BaseQRankSum=-0.891;ClippingRankSum=0.002;DP=5272;ExcessHet=0.4576;FS=0.548;MLEAC=4;MLEAF=0.667;MQ=60;MQRankSum=0.002;QD=34.16;ReadPosRankSum=-3.778;SOR=0.739	GT:AD:DP:GQ:PL	0/0:1812,1:1813:99:0,5398,61087	1/1:2,1662:1664:99:56988,4945,0	1/1:4,1777:1781:99:60745,5214,0
+MT	12705	rs193302956	C	T	129264	.	AC=4;AF=0.667;AN=6;BaseQRankSum=-1.576;ClippingRankSum=-0.008;DB;DP=6157;ExcessHet=0.4576;FS=0.531;MLEAC=4;MLEAF=0.667;MQ=60;MQRankSum=-0.008;QD=34.38;ReadPosRankSum=0.001;SOR=0.709	GT:AD:DP:GQ:PL	0/0:2359,10:2369:99:0,6679,80813	1/1:1,2137:2138:99:73546,6407,0	1/1:1,1621:1622:99:55756,4857,0
+MT	13406	.	G	A	18935.1	.	AC=1;AF=0.167;AN=6;BaseQRankSum=4.892;ClippingRankSum=-0.001;DP=6741;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.167;MQ=59.93;MQRankSum=1.557;QD=9.68;ReadPosRankSum=-3.763;SOR=0.717	GT:AD:DP:GQ:PL	0/0:2539,1:2540:99:0,7611,88829	0/0:2216,0:2216:99:0,6672,76749	0/1:1224,733:1957:99:18966,0,36219
+MT	13611	.	A	G	226523	.	AC=4;AF=0.667;AN=6;BaseQRankSum=-0.715;ClippingRankSum=-0.018;DP=10456;ExcessHet=0.4576;FS=0.541;MLEAC=4;MLEAF=0.667;MQ=59.95;MQRankSum=3.806;QD=34.57;ReadPosRankSum=-3.084;SOR=0.749	GT:AD:DP:GQ:PL	0/0:3838,2:3840:99:0,11470,131432	1/1:0,3717:3717:99:128767,11180,0	1/1:1,2834:2835:99:97794,8490,0
+MT	13928	rs28359184	G	C	158255	.	AC=4;AF=0.667;AN=6;BaseQRankSum=-2.077;ClippingRankSum=-0.001;DB;DP=7572;ExcessHet=0.4576;FS=0.537;MLEAC=4;MLEAF=0.667;MQ=60;MQRankSum=-0.001;QD=34.55;ReadPosRankSum=0.177;SOR=0.614	GT:AD:DP:GQ:PL	0/0:2947,0:2947:99:0,8798,100755	1/1:0,2700:2700:99:93028,8117,0	1/1:0,1880:1880:99:65265,5652,0
+MT	14148	rs28357668	A	G	163476	.	AC=4;AF=0.667;AN=6;BaseQRankSum=-0.068;ClippingRankSum=-0.002;DB;DP=7865;ExcessHet=0.4576;FS=0;MLEAC=4;MLEAF=0.667;MQ=59.96;MQRankSum=3.807;QD=34.19;ReadPosRankSum=1.224;SOR=0.702	GT:AD:DP:GQ:PL	0/0:3019,2:3021:99:0,9046,102891	1/1:0,2820:2820:99:96517,8442,0	1/1:0,1962:1962:99:66997,5890,0
+MT	14766	rs527236041	C	T	184246	.	AC=4;AF=0.667;AN=6;BaseQRankSum=-4.916;ClippingRankSum=-0.016;DB;DP=8840;ExcessHet=0.4576;FS=1.797;MLEAC=4;MLEAF=0.667;MQ=60;MQRankSum=-0.93;QD=33.68;ReadPosRankSum=-8.259;SOR=0.565	GT:AD:DP:GQ:PL	0/0:3318,3:3321:99:0,9897,113210	1/1:2,3111:3113:99:104758,9287,0	1/1:3,2355:2358:99:79526,6992,0
+MT	15326	rs2853508	A	G	351443	.	AC=6;AF=1;AN=6;DB;DP=9986;ExcessHet=3.0103;FS=0;MLEAC=6;MLEAF=1;MQ=60;QD=23.43;SOR=0.788	GT:AD:DP:GQ:PL	1/1:0,3716:3716:99:131483,11200,0	1/1:0,3560:3560:99:125277,10713,0	1/1:0,2690:2690:99:94709,8122,0
+MT	15884	.	G	C	203141	.	AC=4;AF=0.667;AN=6;BaseQRankSum=1.841;ClippingRankSum=-0.02;DP=9526;ExcessHet=0.4576;FS=0;MLEAC=4;MLEAF=0.667;MQ=60;MQRankSum=-0.02;QD=34.42;ReadPosRankSum=-6.501;SOR=0.721	GT:AD:DP:GQ:PL	0/0:3595,1:3596:99:0,10754,123245	1/1:0,3167:3167:99:109155,9521,0	1/1:1,2733:2734:99:94024,8195,0
+MT	16184	rs34100702	C	T	118028	.	AC=4;AF=0.667;AN=6;BaseQRankSum=3.32;ClippingRankSum=0;DB;DP=4885;ExcessHet=0.4576;FS=3.599;MLEAC=4;MLEAF=0.667;MQ=60;MQRankSum=0;QD=34.24;ReadPosRankSum=2.363;SOR=0.93	GT:AD:DP:GQ:PL	0/0:1406,1:1407:99:0,4183,47484	1/1:0,1969:1969:99:67640,5881,0	1/1:0,1478:1478:99:50426,4408,0
+MT	16223	rs2853513	C	T	120350	.	AC=4;AF=0.667;AN=6;BaseQRankSum=0.452;ClippingRankSum=-0.001;DB;DP=4936;ExcessHet=0.4576;FS=8.04;MLEAC=4;MLEAF=0.667;MQ=60;MQRankSum=-0.001;QD=34.48;ReadPosRankSum=0.914;SOR=1.051	GT:AD:DP:GQ:PL	0/0:1405,1:1406:99:0,4181,48090	1/1:0,2018:2018:99:69507,6063,0	1/1:0,1472:1472:99:50881,4420,0
+MT	16263	.	T	C	50770.1	.	AC=2;AF=0.333;AN=6;BaseQRankSum=-1.81;ClippingRankSum=0;DP=5017;ExcessHet=0.4576;FS=18.084;MLEAC=2;MLEAF=0.333;MQ=60;MQRankSum=0;QD=34.35;ReadPosRankSum=-1.303;SOR=0.23	GT:AD:DP:GQ:PL	1/1:2,1476:1478:99:50817,4422,0	0/0:1994,0:1994:99:0,5989,69016	0/0:1475,0:1475:99:0,4439,51221
+MT	16292	rs144417390	C	T	113132	.	AC=4;AF=0.667;AN=6;BaseQRankSum=-7.684;ClippingRankSum=-0.001;DB;DP=5092;ExcessHet=0.4576;FS=26.574;MLEAC=4;MLEAF=0.667;MQ=60;MQRankSum=-0.001;QD=33.37;ReadPosRankSum=4.375;SOR=2.115	GT:AD:DP:GQ:PL	0/0:1652,0:1652:99:0,4962,57207	1/1:1,1913:1914:99:63339,5702,0	1/1:0,1476:1476:99:49831,4419,0
+MT	16519	rs3937033	T	C	263844	.	AC=6;AF=1;AN=6;DB;DP=7636;ExcessHet=3.0103;FS=0;MLEAC=6;MLEAF=1;MQ=60;QD=34.73;SOR=3.902	GT:AD:DP:GQ:PL	1/1:0,1759:1759:99:61243,5289,0	1/1:0,4094:4094:99:142289,12314,0	1/1:0,1744:1744:99:60338,5251,0
diff --git a/tests/seqvars/ingest/example_gatk_hc.vcf.gz b/tests/seqvars/ingest/example_gatk_hc.vcf.gz
new file mode 100644
index 00000000..71a45632
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diff --git a/tests/seqvars/ingest/example_gatk_hc.vcf.gz.tbi b/tests/seqvars/ingest/example_gatk_hc.vcf.gz.tbi
new file mode 100644
index 00000000..096f1905
Binary files /dev/null and b/tests/seqvars/ingest/example_gatk_hc.vcf.gz.tbi differ