From c19890891fdd58257e86fa1c02493a5535315bac Mon Sep 17 00:00:00 2001 From: Manuel Holtgrewe <manuel.holtgrewe@bih-charite.de> Date: Wed, 22 Nov 2023 08:48:14 +0100 Subject: [PATCH] wip --- rules/output/annonars/genes.smk | 3 --- 1 file changed, 3 deletions(-) diff --git a/rules/output/annonars/genes.smk b/rules/output/annonars/genes.smk index 8a40cdf..af521ea 100644 --- a/rules/output/annonars/genes.smk +++ b/rules/output/annonars/genes.smk @@ -36,14 +36,11 @@ rule output_annonars_genes: # -- build annonars genes RocksDB file export TMPDIR=$(mktemp -d) trap "rm -rf $TMPDIR" EXIT - tail -n +4 {input.clingen} > $TMPDIR/clingen.csv - annonars gene import \ --path-out-rocksdb $(dirname {output.rocksdb_identity}) \ --path-in-acmg {input.acmg_sf} \ --path-in-clingen-37 {input.clingen_37} \ --path-in-clingen-38 {input.clingen_38} \ - --path-in-clingen $TMPDIR/clingen.csv \ --path-in-gnomad-constraints {input.gnomad_constraints} \ --path-in-dbnsfp {input.dbnsfp} \ --path-in-hgnc {input.hgnc} \