From c19890891fdd58257e86fa1c02493a5535315bac Mon Sep 17 00:00:00 2001
From: Manuel Holtgrewe <manuel.holtgrewe@bih-charite.de>
Date: Wed, 22 Nov 2023 08:48:14 +0100
Subject: [PATCH] wip

---
 rules/output/annonars/genes.smk | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/rules/output/annonars/genes.smk b/rules/output/annonars/genes.smk
index 8a40cdf..af521ea 100644
--- a/rules/output/annonars/genes.smk
+++ b/rules/output/annonars/genes.smk
@@ -36,14 +36,11 @@ rule output_annonars_genes:  # -- build annonars genes RocksDB file
         export TMPDIR=$(mktemp -d)
         trap "rm -rf $TMPDIR" EXIT
 
-        tail -n +4 {input.clingen} > $TMPDIR/clingen.csv
-
         annonars gene import \
             --path-out-rocksdb $(dirname {output.rocksdb_identity}) \
             --path-in-acmg {input.acmg_sf} \
             --path-in-clingen-37 {input.clingen_37} \
             --path-in-clingen-38 {input.clingen_38} \
-            --path-in-clingen $TMPDIR/clingen.csv \
             --path-in-gnomad-constraints {input.gnomad_constraints} \
             --path-in-dbnsfp {input.dbnsfp} \
             --path-in-hgnc {input.hgnc} \