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add option to specify index patient during import #133

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stolpeo opened this issue Nov 1, 2024 · 1 comment · Fixed by #136
Closed

add option to specify index patient during import #133

stolpeo opened this issue Nov 1, 2024 · 1 comment · Fixed by #136
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@tedil

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@stolpeo
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stolpeo commented Nov 1, 2024

Describe the bug
Currently, the importer takes the first available patient from the pedigree as the index patient. This can clearly lead to unexpected filter settings in VarFish.

Expected behavior
Add an option to specify the index patient in a case.
@stolpeo
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stolpeo commented Nov 1, 2024

varfish-cli/varfish_cli/cli/importer/create.py

Line 522 in f6f5adc

index = self.pedigree[0].name

@stolpeo stolpeo mentioned this issue Nov 1, 2024
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@tedil tedil self-assigned this Nov 8, 2024
@tedil tedil mentioned this issue Nov 8, 2024
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feat: add index option to case import varfish-org/varfish-cli
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@stolpeo @tedil