diff --git a/Cargo.lock b/Cargo.lock
index 9d1a3f6b..ef013f70 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -280,7 +280,7 @@ dependencies = [
  "noodles-core",
  "noodles-csi",
  "noodles-tabix",
- "noodles-vcf",
+ "noodles-vcf 0.39.0",
  "prost",
  "prost-build",
  "rayon",
@@ -1778,7 +1778,7 @@ dependencies = [
  "noodles-csi",
  "noodles-fasta",
  "noodles-tabix",
- "noodles-vcf",
+ "noodles-vcf 0.40.0",
  "parse-display",
  "pretty_assertions",
  "procfs",
@@ -2002,6 +2002,21 @@ dependencies = [
  "percent-encoding",
 ]
 
+[[package]]
+name = "noodles-vcf"
+version = "0.40.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "dcd62cddca514dd04a13d3f4bf4ff83b5c7bca63c8e6b9ae0de2186ea6517a48"
+dependencies = [
+ "indexmap 2.0.0",
+ "memchr",
+ "noodles-bgzf",
+ "noodles-core",
+ "noodles-csi",
+ "noodles-tabix",
+ "percent-encoding",
+]
+
 [[package]]
 name = "nu-ansi-term"
 version = "0.46.0"
diff --git a/Cargo.toml b/Cargo.toml
index bc48d8d1..fbd5f42e 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -52,7 +52,7 @@ noodles-core = "0.12"
 noodles-csi = "0.24"
 noodles-fasta = "0.29"
 noodles-tabix = "0.29"
-noodles-vcf = "0.39"
+noodles-vcf = "0.40"
 parse-display = "0.8"
 procfs = "0.15"
 prost = "0.12"