From a8a923fdcbc5242bee2ad887e03f6ed72643b7cf Mon Sep 17 00:00:00 2001
From: Till Hartmann <till.hartmann@bih-charite.de>
Date: Wed, 27 Nov 2024 15:31:06 +0100
Subject: [PATCH] build(deps): remove unused dependencies (#631)

---
 .github/workflows/rust.yml |   6 +-
 Cargo.lock                 | 546 +++++++++----------------------------
 Cargo.toml                 |  16 +-
 3 files changed, 147 insertions(+), 421 deletions(-)

diff --git a/.github/workflows/rust.yml b/.github/workflows/rust.yml
index 5b3c614f..7a414ae6 100644
--- a/.github/workflows/rust.yml
+++ b/.github/workflows/rust.yml
@@ -104,6 +104,11 @@ jobs:
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
 
+      - uses: Swatinem/rust-cache@v2
+        with:
+          cache-directories: |
+            ~/.cargo/registry/src/**/librocksdb-sys-*
+
       - name: cargo build
         run: cargo build --verbose
 
@@ -112,7 +117,6 @@ jobs:
 
       - uses: Swatinem/rust-cache@v2
         with:
-          key: "covtest"
           cache-directories: |
             ~/.cargo/registry/src/**/librocksdb-sys-*
 
diff --git a/Cargo.lock b/Cargo.lock
index b80939ba..f14dc52e 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -65,7 +65,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "e01ed3140b2f8d422c68afa1ed2e85d996ea619c988ac834d255db32138655cb"
 dependencies = [
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -182,7 +182,7 @@ dependencies = [
  "actix-router",
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -401,44 +401,11 @@ version = "0.7.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "7c02d123df017efcdfbd739ef81735b36c5ba83ec3c59c80a9d7ecc718f92e50"
 
-[[package]]
-name = "async-attributes"
-version = "1.1.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a3203e79f4dd9bdda415ed03cf14dae5a2bf775c683a00f94e9cd1faf0f596e5"
-dependencies = [
- "quote",
- "syn 1.0.109",
-]
-
-[[package]]
-name = "async-channel"
-version = "1.9.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "81953c529336010edd6d8e358f886d9581267795c61b19475b71314bffa46d35"
-dependencies = [
- "concurrent-queue",
- "event-listener 2.5.3",
- "futures-core",
-]
-
-[[package]]
-name = "async-channel"
-version = "2.3.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "89b47800b0be77592da0afd425cc03468052844aff33b84e33cc696f64e77b6a"
-dependencies = [
- "concurrent-queue",
- "event-listener-strategy",
- "futures-core",
- "pin-project-lite",
-]
-
 [[package]]
 name = "async-compression"
-version = "0.4.17"
+version = "0.4.18"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0cb8f1d480b0ea3783ab015936d2a55c87e219676f0c0b7dec61494043f21857"
+checksum = "df895a515f70646414f4b45c0b79082783b80552b373a68283012928df56f522"
 dependencies = [
  "flate2",
  "futures-core",
@@ -447,97 +414,6 @@ dependencies = [
  "tokio",
 ]
 
-[[package]]
-name = "async-executor"
-version = "1.13.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "30ca9a001c1e8ba5149f91a74362376cc6bc5b919d92d988668657bd570bdcec"
-dependencies = [
- "async-task",
- "concurrent-queue",
- "fastrand",
- "futures-lite",
- "slab",
-]
-
-[[package]]
-name = "async-global-executor"
-version = "2.4.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "05b1b633a2115cd122d73b955eadd9916c18c8f510ec9cd1686404c60ad1c29c"
-dependencies = [
- "async-channel 2.3.1",
- "async-executor",
- "async-io",
- "async-lock",
- "blocking",
- "futures-lite",
- "once_cell",
-]
-
-[[package]]
-name = "async-io"
-version = "2.4.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "43a2b323ccce0a1d90b449fd71f2a06ca7faa7c54c2751f06c9bd851fc061059"
-dependencies = [
- "async-lock",
- "cfg-if",
- "concurrent-queue",
- "futures-io",
- "futures-lite",
- "parking",
- "polling",
- "rustix",
- "slab",
- "tracing",
- "windows-sys 0.59.0",
-]
-
-[[package]]
-name = "async-lock"
-version = "3.4.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ff6e472cdea888a4bd64f342f09b3f50e1886d32afe8df3d663c01140b811b18"
-dependencies = [
- "event-listener 5.3.1",
- "event-listener-strategy",
- "pin-project-lite",
-]
-
-[[package]]
-name = "async-std"
-version = "1.13.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c634475f29802fde2b8f0b505b1bd00dfe4df7d4a000f0b36f7671197d5c3615"
-dependencies = [
- "async-attributes",
- "async-channel 1.9.0",
- "async-global-executor",
- "async-io",
- "async-lock",
- "crossbeam-utils",
- "futures-channel",
- "futures-core",
- "futures-io",
- "futures-lite",
- "gloo-timers",
- "kv-log-macro",
- "log",
- "memchr",
- "once_cell",
- "pin-project-lite",
- "pin-utils",
- "slab",
- "wasm-bindgen-futures",
-]
-
-[[package]]
-name = "async-task"
-version = "4.7.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8b75356056920673b02621b35afd0f7dda9306d03c79a30f5c56c44cf256e3de"
-
 [[package]]
 name = "async-trait"
 version = "0.1.83"
@@ -546,15 +422,9 @@ checksum = "721cae7de5c34fbb2acd27e21e6d2cf7b886dce0c27388d46c4e6c47ea4318dd"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
-[[package]]
-name = "atomic-waker"
-version = "1.1.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1505bd5d3d116872e7271a6d4e16d81d0c8570876c8de68093a09ac269d8aac0"
-
 [[package]]
 name = "autocfg"
 version = "1.4.0"
@@ -623,7 +493,7 @@ dependencies = [
  "regex",
  "rustc-hash 1.1.0",
  "shlex",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -746,19 +616,6 @@ dependencies = [
  "generic-array",
 ]
 
-[[package]]
-name = "blocking"
-version = "1.6.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "703f41c54fc768e63e091340b424302bb1c29ef4aa0c7f10fe849dfb114d29ea"
-dependencies = [
- "async-channel 2.3.1",
- "async-task",
- "futures-io",
- "futures-lite",
- "piper",
-]
-
 [[package]]
 name = "boolvec"
 version = "0.2.6"
@@ -767,9 +624,9 @@ checksum = "c057a3e5631e754d98c5a9e3baa56803fce8fe238b009ecd876e57d381d44c00"
 
 [[package]]
 name = "borsh"
-version = "1.5.2"
+version = "1.5.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f5327f6c99920069d1fe374aa743be1af0031dea9f250852cdf1ae6a0861ee24"
+checksum = "2506947f73ad44e344215ccd6403ac2ae18cd8e046e581a441bf8d199f257f03"
 dependencies = [
  "borsh-derive",
  "cfg_aliases",
@@ -777,15 +634,15 @@ dependencies = [
 
 [[package]]
 name = "borsh-derive"
-version = "1.5.2"
+version = "1.5.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "10aedd8f1a81a8aafbfde924b0e3061cd6fedd6f6bbcfc6a76e6fd426d7bfe26"
+checksum = "c2593a3b8b938bd68373196c9832f516be11fa487ef4ae745eb282e6a56a7244"
 dependencies = [
  "once_cell",
  "proc-macro-crate",
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -811,9 +668,9 @@ dependencies = [
 
 [[package]]
 name = "bstr"
-version = "1.10.0"
+version = "1.11.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "40723b8fb387abc38f4f4a37c09073622e41dd12327033091ef8950659e6dc0c"
+checksum = "1a68f1f47cdf0ec8ee4b941b2eee2a80cb796db73118c0dd09ac63fbe405be22"
 dependencies = [
  "memchr",
  "serde",
@@ -888,9 +745,9 @@ checksum = "5ce89b21cab1437276d2650d57e971f9d548a2d9037cc231abdc0562b97498ce"
 
 [[package]]
 name = "bytemuck"
-version = "1.19.0"
+version = "1.20.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8334215b81e418a0a7bdb8ef0849474f40bb10c8b71f1c4ed315cff49f32494d"
+checksum = "8b37c88a63ffd85d15b406896cc343916d7cf57838a847b3a6f2ca5d39a5695a"
 
 [[package]]
 name = "byteorder"
@@ -906,9 +763,9 @@ checksum = "9ac0150caa2ae65ca5bd83f25c7de183dea78d4d366469f148435e2acfbad0da"
 
 [[package]]
 name = "bytestring"
-version = "1.3.1"
+version = "1.4.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "74d80203ea6b29df88012294f62733de21cfeab47f17b41af3a38bc30a03ee72"
+checksum = "e465647ae23b2823b0753f50decb2d5a86d2bb2cac04788fafd1f80e45378e5f"
 dependencies = [
  "bytes",
 ]
@@ -958,7 +815,7 @@ dependencies = [
  "darling",
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -988,9 +845,9 @@ checksum = "37b2a672a2cb129a2e41c10b1224bb368f9f37a2b16b612598138befd7b37eb5"
 
 [[package]]
 name = "cc"
-version = "1.1.37"
+version = "1.2.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "40545c26d092346d8a8dab71ee48e7685a7a9cba76e634790c215b41a4a7b4cf"
+checksum = "fd9de9f2205d5ef3fd67e685b0df337994ddd4495e2a28d185500d0e1edfea47"
 dependencies = [
  "jobserver",
  "libc",
@@ -1073,9 +930,9 @@ dependencies = [
 
 [[package]]
 name = "clap"
-version = "4.5.20"
+version = "4.5.21"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b97f376d85a664d5837dbae44bf546e6477a679ff6610010f17276f686d867e8"
+checksum = "fb3b4b9e5a7c7514dfa52869339ee98b3156b0bfb4e8a77c4ff4babb64b1604f"
 dependencies = [
  "clap_builder",
  "clap_derive",
@@ -1093,9 +950,9 @@ dependencies = [
 
 [[package]]
 name = "clap_builder"
-version = "4.5.20"
+version = "4.5.21"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "19bc80abd44e4bed93ca373a0704ccbd1b710dc5749406201bb018272808dc54"
+checksum = "b17a95aa67cc7b5ebd32aa5370189aa0d79069ef1c64ce893bd30fb24bff20ec"
 dependencies = [
  "anstream",
  "anstyle",
@@ -1112,14 +969,14 @@ dependencies = [
  "heck",
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
 name = "clap_lex"
-version = "0.7.2"
+version = "0.7.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1462739cb27611015575c0c11df5df7601141071f07518d56fcc1be504cbec97"
+checksum = "afb84c814227b90d6895e01398aee0d8033c00e7466aca416fb6a8e0eb19d8a7"
 
 [[package]]
 name = "colorchoice"
@@ -1127,15 +984,6 @@ version = "1.0.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "5b63caa9aa9397e2d9480a9b13673856c78d8ac123288526c37d7839f2a86990"
 
-[[package]]
-name = "concurrent-queue"
-version = "2.5.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4ca0197aee26d1ae37445ee532fefce43251d24cc7c166799f4d46817f1d3973"
-dependencies = [
- "crossbeam-utils",
-]
-
 [[package]]
 name = "console"
 version = "0.15.8"
@@ -1181,16 +1029,6 @@ version = "0.8.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "773648b94d0e5d620f64f280777445740e61fe701025087ec8b57f45c791888b"
 
-[[package]]
-name = "coz"
-version = "0.1.3"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cef55b3fe2f5477d59e12bc792e8b3c95a25bd099eadcfae006ecea136de76e2"
-dependencies = [
- "libc",
- "once_cell",
-]
-
 [[package]]
 name = "cpp_demangle"
 version = "0.4.4"
@@ -1202,9 +1040,9 @@ dependencies = [
 
 [[package]]
 name = "cpufeatures"
-version = "0.2.15"
+version = "0.2.16"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0ca741a962e1b0bff6d724a1a0958b686406e853bb14061f218562e1896f95e6"
+checksum = "16b80225097f2e5ae4e7179dd2266824648f3e2f49d9134d584b76389d31c4c3"
 dependencies = [
  "libc",
 ]
@@ -1354,7 +1192,7 @@ dependencies = [
  "proc-macro2",
  "quote",
  "strsim",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -1365,7 +1203,7 @@ checksum = "d336a2a514f6ccccaa3e09b02d41d35330c07ddf03a62165fcec10bb561c7806"
 dependencies = [
  "darling_core",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -1405,7 +1243,7 @@ checksum = "d150dea618e920167e5973d70ae6ece4385b7164e0d799fe7c122dd0a5d912ad"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -1416,7 +1254,7 @@ checksum = "2cdc8d50f426189eef89dac62fabfa0abb27d5cc008f25bf4156a0203325becc"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -1427,7 +1265,7 @@ checksum = "30542c1ad912e0e3d22a1935c290e12e8a29d704a420177a31faad4a601a0800"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -1448,7 +1286,7 @@ dependencies = [
  "darling",
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -1458,7 +1296,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "ab63b0e2bf4d5928aff72e83a7dace85d7bba5fe12dcc3c5a572d78caffd3f3c"
 dependencies = [
  "derive_builder_core",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -1471,7 +1309,7 @@ dependencies = [
  "proc-macro2",
  "quote",
  "rustc_version 0.4.1",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -1515,7 +1353,7 @@ checksum = "97369cbbc041bc366949bc74d34658d6cda5621039731c6310521892a3a20ae0"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -1563,7 +1401,7 @@ checksum = "f282cfdfe92516eb26c2af8589c274c7c17681f5ecc03c18255fe741c6aa64eb"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -1584,7 +1422,7 @@ checksum = "de0d48a183585823424a4ce1aa132d174a6a81bd540895822eb4c8373a8e49e8"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -1636,33 +1474,6 @@ dependencies = [
  "windows-sys 0.52.0",
 ]
 
-[[package]]
-name = "event-listener"
-version = "2.5.3"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0206175f82b8d6bf6652ff7d71a1e27fd2e4efde587fd368662814d6ec1d9ce0"
-
-[[package]]
-name = "event-listener"
-version = "5.3.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6032be9bd27023a771701cc49f9f053c751055f71efb2e0ae5c15809093675ba"
-dependencies = [
- "concurrent-queue",
- "parking",
- "pin-project-lite",
-]
-
-[[package]]
-name = "event-listener-strategy"
-version = "0.5.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0f214dc438f977e6d4e3500aaa277f5ad94ca83fbbd9b1a15713ce2344ccc5a1"
-dependencies = [
- "event-listener 5.3.1",
- "pin-project-lite",
-]
-
 [[package]]
 name = "fallible-iterator"
 version = "0.2.0"
@@ -1713,9 +1524,9 @@ checksum = "0ce7134b9999ecaf8bcd65542e436736ef32ddca1b3e06094cb6ec5755203b80"
 
 [[package]]
 name = "flate2"
-version = "1.0.34"
+version = "1.0.35"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a1b589b4dc103969ad3cf85c950899926ec64300a1a46d76c03a6072957036f0"
+checksum = "c936bfdafb507ebbf50b8074c54fa31c5be9a1e7e5f467dd659697041407d07c"
 dependencies = [
  "crc32fast",
  "miniz_oxide",
@@ -1790,19 +1601,6 @@ version = "0.3.31"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "9e5c1b78ca4aae1ac06c48a526a655760685149f0d465d21f37abfe57ce075c6"
 
-[[package]]
-name = "futures-lite"
-version = "2.5.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cef40d21ae2c515b51041df9ed313ed21e572df340ea58a922a0aefe7e8891a1"
-dependencies = [
- "fastrand",
- "futures-core",
- "futures-io",
- "parking",
- "pin-project-lite",
-]
-
 [[package]]
 name = "futures-macro"
 version = "0.3.31"
@@ -1811,7 +1609,7 @@ checksum = "162ee34ebcb7c64a8abebc059ce0fee27c2262618d7b60ed8faf72fef13c3650"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -1876,8 +1674,10 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "c4567c8db10ae91089c99af84c68c38da3ec2f087c3f82960bcdbf3656b6f4d7"
 dependencies = [
  "cfg-if",
+ "js-sys",
  "libc",
  "wasi",
+ "wasm-bindgen",
 ]
 
 [[package]]
@@ -1905,18 +1705,6 @@ version = "0.3.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "d2fabcfbdc87f4758337ca535fb41a6d701b65693ce38287d856d1674551ec9b"
 
-[[package]]
-name = "gloo-timers"
-version = "0.3.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bbb143cf96099802033e0d4f4963b19fd2e0b728bcf076cd9cf7f6634f092994"
-dependencies = [
- "futures-channel",
- "futures-core",
- "js-sys",
- "wasm-bindgen",
-]
-
 [[package]]
 name = "h2"
 version = "0.3.26"
@@ -1967,9 +1755,9 @@ dependencies = [
 
 [[package]]
 name = "hashbrown"
-version = "0.15.1"
+version = "0.15.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3a9bfc1af68b1726ea47d3d5109de126281def866b33970e10fbab11b5dafab3"
+checksum = "bf151400ff0baff5465007dd2f3e717f3fe502074ca563069ce3a6629d07b289"
 
 [[package]]
 name = "hashlink"
@@ -2113,9 +1901,9 @@ checksum = "a17b27f28a7466846baca75f0a5244e546e44178eb7f1c07a3820f413e91c6b0"
 
 [[package]]
 name = "hyper"
-version = "1.5.0"
+version = "1.5.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bbbff0a806a4728c99295b254c8838933b5b082d75e3cb70c8dab21fdfbcfa9a"
+checksum = "97818827ef4f364230e16705d4706e2897df2bb60617d6ca15d598025a3c481f"
 dependencies = [
  "bytes",
  "futures-channel",
@@ -2305,7 +2093,7 @@ checksum = "1ec89e9337638ecdc08744df490b221a7399bf8d164eb52a665454e60e075ad6"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -2348,7 +2136,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "707907fe3c25f5424cce2cb7e1cbcafee6bdbe735ca90ef77c29e84591e5b9da"
 dependencies = [
  "equivalent",
- "hashbrown 0.15.1",
+ "hashbrown 0.15.2",
  "serde",
 ]
 
@@ -2458,9 +2246,9 @@ dependencies = [
 
 [[package]]
 name = "itoa"
-version = "1.0.11"
+version = "1.0.14"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "49f1f14873335454500d59611f1cf4a4b0f786f9ac11f4312a78e4cf2566695b"
+checksum = "d75a2a4b1b190afb6f5425f10f6a8f959d2ea0b9c2b1d79553551850539e4674"
 
 [[package]]
 name = "jobserver"
@@ -2509,16 +2297,7 @@ dependencies = [
  "convert_case 0.6.0",
  "proc-macro2",
  "quote",
- "syn 2.0.87",
-]
-
-[[package]]
-name = "kv-log-macro"
-version = "1.0.7"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0de8b303297635ad57c9f5059fd9cee7a47f8e8daa09df0fcd07dd39fb22977f"
-dependencies = [
- "log",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -2605,9 +2384,9 @@ dependencies = [
 
 [[package]]
 name = "libc"
-version = "0.2.162"
+version = "0.2.166"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "18d287de67fe55fd7e1581fe933d965a5a9477b38e949cfa9f8574ef01506398"
+checksum = "c2ccc108bbc0b1331bd061864e7cd823c0cab660bbe6970e66e2c0614decde36"
 
 [[package]]
 name = "libgit2-sys"
@@ -2689,9 +2468,9 @@ checksum = "78b3ae25bc7c8c38cec158d1f2757ee79e9b3740fbc7ccf0e59e4b08d793fa89"
 
 [[package]]
 name = "litemap"
-version = "0.7.3"
+version = "0.7.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "643cb0b8d4fcc284004d5fd0d67ccf61dfffadb7f75e1e71bc420f4688a3a704"
+checksum = "4ee93343901ab17bd981295f2cf0026d4ad018c7c31ba84549a4ddbb47a45104"
 
 [[package]]
 name = "local-channel"
@@ -2731,9 +2510,6 @@ name = "log"
 version = "0.4.22"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "a7a70ba024b9dc04c27ea2f0c0548feb474ec5c54bba33a7f72f873a39d07b24"
-dependencies = [
- "value-bag",
-]
 
 [[package]]
 name = "lz4-sys"
@@ -2793,17 +2569,13 @@ dependencies = [
  "annonars",
  "anyhow",
  "async-compression",
- "async-std",
- "bgzip",
  "bio",
  "biocommons-bioutils",
  "built",
  "byte-unit",
- "byteorder",
  "chrono",
  "clap",
  "clap-verbosity-flag",
- "coz",
  "criterion",
  "csv",
  "derivative",
@@ -2817,7 +2589,6 @@ dependencies = [
  "hgvs",
  "hxdmp",
  "indexmap",
- "indicatif",
  "insta",
  "itertools 0.13.0",
  "jsonl",
@@ -2829,7 +2600,6 @@ dependencies = [
  "parse-display",
  "pbjson",
  "pbjson-build",
- "pbjson-types",
  "percent-encoding",
  "pprof",
  "pretty_assertions",
@@ -2857,7 +2627,6 @@ dependencies = [
  "tracing-subscriber",
  "tracing-test",
  "utoipa 4.2.3",
- "utoipa-actix-web",
  "utoipa-swagger-ui 7.1.0",
  "uuid",
  "zstd",
@@ -2963,7 +2732,7 @@ checksum = "254a5372af8fc138e36684761d3c0cdb758a4410e938babcff1c860ce14ddbfc"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -3348,7 +3117,7 @@ dependencies = [
  "proc-macro-crate",
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -3376,7 +3145,7 @@ dependencies = [
  "kinded",
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
  "urlencoding",
 ]
 
@@ -3416,12 +3185,6 @@ version = "0.1.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "b15813163c1d831bf4a13c3610c05c0d03b39feb07f7e09fa234dac9b15aaf39"
 
-[[package]]
-name = "parking"
-version = "2.2.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f38d5652c16fde515bb1ecef450ab0f6a219d619a7274976324d5e377f7dceba"
-
 [[package]]
 name = "parking_lot"
 version = "0.12.3"
@@ -3467,7 +3230,7 @@ dependencies = [
  "regex",
  "regex-syntax 0.8.5",
  "structmeta",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -3559,17 +3322,6 @@ version = "0.1.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "8b870d8c151b6f2fb93e84a13146138f05d02ed11c7e7c54f8826aaaf7c9f184"
 
-[[package]]
-name = "piper"
-version = "0.2.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "96c8c490f422ef9a4efd2cb5b42b76c8613d7e7dfc1caf667b8a3350a5acc066"
-dependencies = [
- "atomic-waker",
- "fastrand",
- "futures-io",
-]
-
 [[package]]
 name = "pkg-config"
 version = "0.3.31"
@@ -3604,32 +3356,17 @@ dependencies = [
  "plotters-backend",
 ]
 
-[[package]]
-name = "polling"
-version = "3.7.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a604568c3202727d1507653cb121dbd627a58684eb09a820fd746bee38b4442f"
-dependencies = [
- "cfg-if",
- "concurrent-queue",
- "hermit-abi 0.4.0",
- "pin-project-lite",
- "rustix",
- "tracing",
- "windows-sys 0.59.0",
-]
-
 [[package]]
 name = "portable-atomic"
-version = "1.9.0"
+version = "1.10.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cc9c68a3f6da06753e9335d63e27f6b9754dd1920d941135b7ea8224f141adb2"
+checksum = "280dc24453071f1b63954171985a0b0d30058d287960968b9b2aca264c8d4ee6"
 
 [[package]]
 name = "portable-atomic-util"
-version = "0.2.3"
+version = "0.2.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "90a7d5beecc52a491b54d6dd05c7a45ba1801666a5baad9fdbfc6fef8d2d206c"
+checksum = "d8a2f0d8d040d7848a709caf78912debcc3f33ee4b3cac47d73d1e1069e83507"
 dependencies = [
  "portable-atomic",
 ]
@@ -3731,7 +3468,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "64d1ec885c64d0457d564db4ec299b2dae3f9c02808b8ad9c3a089c591b18033"
 dependencies = [
  "proc-macro2",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -3769,9 +3506,9 @@ dependencies = [
 
 [[package]]
 name = "proc-macro2"
-version = "1.0.89"
+version = "1.0.92"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f139b0662de085916d1fb67d2b4169d1addddda1919e696f3252b740b629986e"
+checksum = "37d3544b3f2748c54e147655edb5025752e2303145b5aefb3c3ea2c78b973bb0"
 dependencies = [
  "unicode-ident",
 ]
@@ -3828,7 +3565,7 @@ dependencies = [
  "prost",
  "prost-types",
  "regex",
- "syn 2.0.87",
+ "syn 2.0.89",
  "tempfile",
 ]
 
@@ -3842,7 +3579,7 @@ dependencies = [
  "itertools 0.13.0",
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -3897,9 +3634,9 @@ dependencies = [
 
 [[package]]
 name = "quinn"
-version = "0.11.5"
+version = "0.11.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8c7c5fdde3cdae7203427dc4f0a68fe0ed09833edc525a03456b153b79828684"
+checksum = "62e96808277ec6f97351a2380e6c25114bc9e67037775464979f3037c92d05ef"
 dependencies = [
  "bytes",
  "pin-project-lite",
@@ -3908,26 +3645,29 @@ dependencies = [
  "rustc-hash 2.0.0",
  "rustls",
  "socket2",
- "thiserror 1.0.69",
+ "thiserror 2.0.3",
  "tokio",
  "tracing",
 ]
 
 [[package]]
 name = "quinn-proto"
-version = "0.11.8"
+version = "0.11.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fadfaed2cd7f389d0161bb73eeb07b7b78f8691047a6f3e73caaeae55310a4a6"
+checksum = "a2fe5ef3495d7d2e377ff17b1a8ce2ee2ec2a18cde8b6ad6619d65d0701c135d"
 dependencies = [
  "bytes",
+ "getrandom",
  "rand",
  "ring",
  "rustc-hash 2.0.0",
  "rustls",
+ "rustls-pki-types",
  "slab",
- "thiserror 1.0.69",
+ "thiserror 2.0.3",
  "tinyvec",
  "tracing",
+ "web-time",
 ]
 
 [[package]]
@@ -4242,7 +3982,7 @@ dependencies = [
  "regex",
  "relative-path",
  "rustc_version 0.4.1",
- "syn 2.0.87",
+ "syn 2.0.89",
  "unicode-ident",
 ]
 
@@ -4280,7 +4020,7 @@ dependencies = [
  "proc-macro2",
  "quote",
  "rust-embed-utils",
- "syn 2.0.87",
+ "syn 2.0.89",
  "walkdir",
 ]
 
@@ -4348,9 +4088,9 @@ dependencies = [
 
 [[package]]
 name = "rustix"
-version = "0.38.40"
+version = "0.38.41"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "99e4ea3e1cdc4b559b8e5650f9c8e5998e3e5c1343b4eaf034565f32318d63c0"
+checksum = "d7f649912bc1495e167a6edee79151c84b1bad49748cb4f1f1167f459f6224f6"
 dependencies = [
  "bitflags 2.6.0",
  "errno",
@@ -4361,9 +4101,9 @@ dependencies = [
 
 [[package]]
 name = "rustls"
-version = "0.23.18"
+version = "0.23.19"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9c9cc1d47e243d655ace55ed38201c19ae02c148ae56412ab8750e8f0166ab7f"
+checksum = "934b404430bb06b3fae2cba809eb45a1ab1aecd64491213d7c3301b88393f8d1"
 dependencies = [
  "once_cell",
  "ring",
@@ -4387,6 +4127,9 @@ name = "rustls-pki-types"
 version = "1.10.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "16f1201b3c9a7ee8039bcadc17b7e605e2945b27eee7631788c1bd2b0643674b"
+dependencies = [
+ "web-time",
+]
 
 [[package]]
 name = "rustls-webpki"
@@ -4486,7 +4229,7 @@ checksum = "ad1e866f866923f252f05c889987993144fb74e722403468a4ebd70c3cd756c0"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -4549,7 +4292,7 @@ dependencies = [
  "darling",
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -4735,7 +4478,7 @@ dependencies = [
  "proc-macro2",
  "quote",
  "structmeta-derive",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -4746,7 +4489,7 @@ checksum = "152a0b65a590ff6c3da95cabe2353ee04e6167c896b28e3b14478c2636c922fc"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -4768,7 +4511,7 @@ dependencies = [
  "proc-macro2",
  "quote",
  "rustversion",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -4779,9 +4522,9 @@ checksum = "13c2bddecc57b384dee18652358fb23172facb8a2c51ccc10d74c157bdea3292"
 
 [[package]]
 name = "symbolic-common"
-version = "12.12.1"
+version = "12.12.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3d4d73159efebfb389d819fd479afb2dbd57dcb3e3f4b7fcfa0e675f5a46c1cb"
+checksum = "e5ba5365997a4e375660bed52f5b42766475d5bc8ceb1bb13fea09c469ea0f49"
 dependencies = [
  "debugid",
  "memmap2",
@@ -4791,9 +4534,9 @@ dependencies = [
 
 [[package]]
 name = "symbolic-demangle"
-version = "12.12.1"
+version = "12.12.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a767859f6549c665011970874c3f541838b4835d5aaaa493d3ee383918be9f10"
+checksum = "beff338b2788519120f38c59ff4bb15174f52a183e547bac3d6072c2c0aa48aa"
 dependencies = [
  "cpp_demangle",
  "rustc-demangle",
@@ -4813,9 +4556,9 @@ dependencies = [
 
 [[package]]
 name = "syn"
-version = "2.0.87"
+version = "2.0.89"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "25aa4ce346d03a6dcd68dd8b4010bcb74e54e62c90c573f394c46eae99aba32d"
+checksum = "44d46482f1c1c87acd84dea20c1bf5ebff4c757009ed6bf19cfd36fb10e92c4e"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -4824,9 +4567,9 @@ dependencies = [
 
 [[package]]
 name = "sync_wrapper"
-version = "1.0.1"
+version = "1.0.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a7065abeca94b6a8a577f9bd45aa0867a2238b74e8eb67cf10d492bc39351394"
+checksum = "0bf256ce5efdfa370213c1dabab5935a12e49f2c58d15e9eac2870d3b4f27263"
 dependencies = [
  "futures-core",
 ]
@@ -4839,7 +4582,7 @@ checksum = "c8af7666ab7b6390ab78131fb5b0fce11d6b7a6951602017c35fa82800708971"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -4893,7 +4636,7 @@ checksum = "4fee6c4efc90059e10f81e6d42c60a18f76588c3d74cb83a0b242a2b6c7504c1"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -4904,7 +4647,7 @@ checksum = "f077553d607adc1caf65430528a576c757a71ed73944b66ebb58ef2bbd243568"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -5015,7 +4758,7 @@ checksum = "693d596312e88961bc67d7f1f97af8a70227d9f90c31bba5806eec004978d752"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -5122,20 +4865,20 @@ dependencies = [
 
 [[package]]
 name = "tracing-attributes"
-version = "0.1.27"
+version = "0.1.28"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "34704c8d6ebcbc939824180af020566b01a7c01f80641264eba0999f6c2b6be7"
+checksum = "395ae124c09f9e6918a2310af6038fba074bcf474ac352496d5910dd59a2226d"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
 name = "tracing-core"
-version = "0.1.32"
+version = "0.1.33"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c06d3da6113f116aaee68e4d601191614c9053067f9ab7f6edbcb161237daa54"
+checksum = "e672c95779cf947c5311f83787af4fa8fffd12fb27e4993211a84bdfd9610f9c"
 dependencies = [
  "once_cell",
  "valuable",
@@ -5188,7 +4931,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "04659ddb06c87d233c566112c1c9c5b9e98256d9af50ec3bc9c8327f873a7568"
 dependencies = [
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -5229,9 +4972,9 @@ checksum = "5ab17db44d7388991a428b2ee655ce0c212e862eff1768a455c58f9aad6e7893"
 
 [[package]]
 name = "unicode-ident"
-version = "1.0.13"
+version = "1.0.14"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e91b56cd4cadaeb79bbf1a5645f6b4f8dc5bde8834ad5894a8db35fda9efa1fe"
+checksum = "adb9e6ca4f869e1180728b7950e35922a7fc6397f7b641499e8f3ef06e50dc83"
 
 [[package]]
 name = "unicode-normalization"
@@ -5280,9 +5023,9 @@ checksum = "8ecb6da28b8a351d773b68d5825ac39017e680750f980f3a1a85cd8dd28a47c1"
 
 [[package]]
 name = "url"
-version = "2.5.3"
+version = "2.5.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8d157f1b96d14500ffdc1f10ba712e780825526c03d9a49b4d0324b0d9113ada"
+checksum = "32f8b686cadd1473f4bd0117a5d28d36b1ade384ea9b5069a1c40aefed7fda60"
 dependencies = [
  "form_urlencoded",
  "idna",
@@ -5345,17 +5088,6 @@ dependencies = [
  "utoipa-gen 5.2.0",
 ]
 
-[[package]]
-name = "utoipa-actix-web"
-version = "0.1.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b7eda9c23c05af0fb812f6a177514047331dac4851a2c8e9c4b895d6d826967f"
-dependencies = [
- "actix-service",
- "actix-web",
- "utoipa 5.2.0",
-]
-
 [[package]]
 name = "utoipa-gen"
 version = "4.3.1"
@@ -5366,7 +5098,7 @@ dependencies = [
  "proc-macro2",
  "quote",
  "regex",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -5378,7 +5110,7 @@ dependencies = [
  "proc-macro2",
  "quote",
  "regex",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
@@ -5433,12 +5165,6 @@ version = "0.1.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "830b7e5d4d90034032940e4ace0d9a9a057e7a45cd94e6c007832e39edb82f6d"
 
-[[package]]
-name = "value-bag"
-version = "1.10.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3ef4c4aa54d5d05a279399bfa921ec387b7aba77caf7a682ae8d86785b8fdad2"
-
 [[package]]
 name = "vcpkg"
 version = "0.2.15"
@@ -5513,7 +5239,7 @@ dependencies = [
  "once_cell",
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
  "wasm-bindgen-shared",
 ]
 
@@ -5547,7 +5273,7 @@ checksum = "26c6ab57572f7a24a4985830b120de1594465e5d500f24afe89e16b4e833ef68"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
  "wasm-bindgen-backend",
  "wasm-bindgen-shared",
 ]
@@ -5580,9 +5306,9 @@ dependencies = [
 
 [[package]]
 name = "webpki-roots"
-version = "0.26.6"
+version = "0.26.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "841c67bff177718f1d4dfefde8d8f0e78f9b6589319ba88312f567fc5841a958"
+checksum = "5d642ff16b7e79272ae451b7322067cdc17cadf68c23264be9d94a32319efe7e"
 dependencies = [
  "rustls-pki-types",
 ]
@@ -5600,9 +5326,9 @@ dependencies = [
 
 [[package]]
 name = "wide"
-version = "0.7.28"
+version = "0.7.30"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b828f995bf1e9622031f8009f8481a85406ce1f4d4588ff746d872043e855690"
+checksum = "58e6db2670d2be78525979e9a5f9c69d296fd7d670549fe9ebf70f8708cb5019"
 dependencies = [
  "bytemuck",
  "safe_arch",
@@ -5807,9 +5533,9 @@ checksum = "cfe53a6657fd280eaa890a3bc59152892ffa3e30101319d168b781ed6529b049"
 
 [[package]]
 name = "yoke"
-version = "0.7.4"
+version = "0.7.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6c5b1314b079b0930c31e3af543d8ee1757b1951ae1e1565ec704403a7240ca5"
+checksum = "120e6aef9aa629e3d4f52dc8cc43a015c7724194c97dfaf45180d2daf2b77f40"
 dependencies = [
  "serde",
  "stable_deref_trait",
@@ -5819,13 +5545,13 @@ dependencies = [
 
 [[package]]
 name = "yoke-derive"
-version = "0.7.4"
+version = "0.7.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "28cc31741b18cb6f1d5ff12f5b7523e3d6eb0852bbbad19d73905511d9849b95"
+checksum = "2380878cad4ac9aac1e2435f3eb4020e8374b5f13c296cb75b4620ff8e229154"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
  "synstructure",
 ]
 
@@ -5847,27 +5573,27 @@ checksum = "fa4f8080344d4671fb4e831a13ad1e68092748387dfc4f55e356242fae12ce3e"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
 name = "zerofrom"
-version = "0.1.4"
+version = "0.1.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "91ec111ce797d0e0784a1116d0ddcdbea84322cd79e5d5ad173daeba4f93ab55"
+checksum = "cff3ee08c995dee1859d998dea82f7374f2826091dd9cd47def953cae446cd2e"
 dependencies = [
  "zerofrom-derive",
 ]
 
 [[package]]
 name = "zerofrom-derive"
-version = "0.1.4"
+version = "0.1.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0ea7b4a3637ea8669cedf0f1fd5c286a17f3de97b8dd5a70a6c167a1730e63a5"
+checksum = "595eed982f7d355beb85837f651fa22e90b3c044842dc7f2c2842c086f295808"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
  "synstructure",
 ]
 
@@ -5896,7 +5622,7 @@ checksum = "6eafa6dfb17584ea3e2bd6e76e0cc15ad7af12b09abdd1ca55961bed9b1063c6"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.87",
+ "syn 2.0.89",
 ]
 
 [[package]]
diff --git a/Cargo.toml b/Cargo.toml
index aa00df5a..c3ccdb05 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -11,7 +11,7 @@ rust-version = "1.75.0"
 
 [features]
 default = []
-dhat-heap = []  # for heap profiling with dhats
+dhat-heap = ["dep:dhat"]  # for heap profiling with dhats
 documentation = []
 
 [package.metadata.docs.rs]
@@ -30,28 +30,23 @@ actix-web = "4.9"
 annonars = "0.42.3"
 anyhow = "1.0"
 async-compression = { version = "0.4", features = ["tokio", "gzip"] }
-bgzip = "0.3"
 bio = "2.0.3"
 biocommons-bioutils = "0.1.4"
 built = { version = "0.7", features = ["chrono", "semver"] }
-byteorder = "1.4"
 byte-unit = "5.1"
 chrono = "0.4"
 clap-verbosity-flag = "2.2"
 clap = { version = "4.5", features = ["derive"] }
-coz = "0.1.3"
 csv = "1.3"
 derivative = "2.2"
 derive_builder = { version = "0.20", features = ["clippy"] }
 derive-new = "0.7.0"
-dhat = "0.3.3"
 enumflags2 = { version = "0.7.10", features = ["serde"] }
 env_logger = "0.11"
 flate2 = "1.0"
 futures = "0.3"
 hgvs = "0.17.3"
 indexmap = { version = "2.6", features = ["serde"] }
-indicatif = { version = "0.17", features = ["rayon"] }
 itertools = "0.13"
 jsonl = "4.0"
 log = "0.4"
@@ -60,7 +55,6 @@ nutype = { version = "0.5.0", features = ["serde"] }
 once_cell = "1.20.2"
 parse-display = "0.10"
 pbjson = "0.7"
-pbjson-types = "0.7"
 percent-encoding = "2.3"
 procfs = "0.17"
 prost = "0.13.3"
@@ -78,14 +72,17 @@ serde_yaml = "0.9"
 strum = { version = "0.26", features = ["derive"] }
 tempfile = "3"
 thousands = "0.2"
-tokio = { version = "1.41", features = ["full"] }
+tokio = { version = "1.41", features = ["rt-multi-thread", "macros"] }
 tracing-subscriber = "0.3"
 tracing = { version = "0.1", features = ["log"] }
 uuid = { version = "1.11", features = ["fast-rng", "serde"] }
 zstd = "0.13"
 utoipa = { version = "4.2.3", features = ["actix_extras", "chrono", "indexmap", "openapi_extensions", "preserve_order", "yaml"] }
 utoipa-swagger-ui = { version = "7.0.1", features = ["actix-web"] }
-utoipa-actix-web = "0.1.2"
+
+[dependencies.dhat]
+version = "0.3.3"
+optional = true
 
 [dependencies.noodles]
 version = "0.77.0"
@@ -98,7 +95,6 @@ pbjson-build = "0.7.0"
 prost-build = "0.13.3"
 
 [dev-dependencies]
-async-std = { version = "1.13", features = ["attributes"] }
 csv = "1.3"
 hxdmp = "0.2"
 insta = { version = "1.41", features = ["yaml"] }