diff --git a/docs/db_build.md b/docs/db_build.md index 7fa81ab5..c5cef6f8 100644 --- a/docs/db_build.md +++ b/docs/db_build.md @@ -138,3 +138,15 @@ $ mehari db create txs \ ``` You will have to build the transcript database for each genome release that you want and manually specify the release to `--genome-release`. + +## Building ClinVar Database + +This assumes that you have converted a recent ClinVar XML file to TSV using [clinvar-tsv](https://github.com/bihealth/clinvar-tsv). + +``` +$ mehari db create seqvar-clinvar \ + --path-output-db ~/Data/mehari/db/seqvars/grch37/clinvar \ + --path-clinvar-tsv path/to/clinvar_seqvars.b37.tsv.gz +``` + +You can specify an optional `--genome-release grch37` argument that will be used to check the ClinVar database to be compatible with your data.