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CHANGELOG.md

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Changelog

0.17.4 (2024-12-09)

Bug Fixes

0.17.3 (2024-10-04)

Bug Fixes

  • Add catch-all tag Other to account for future cdot tag changes (#204) (e02c98c)

0.17.2 (2024-08-06)

Bug Fixes

  • add support for tag 'GENCODE Primary' in cdot json (#201) (0b37341)

0.17.1 (2024-07-26)

Bug Fixes

0.17.0 (2024-07-25)

Features

  • add variant region condition for dups ending in 3' UTR (#192) (#195) (362909c)

0.16.3 (2024-07-16)

Bug Fixes

  • BioType naming for Ig* types, derive Hash for BioType (#189) (62519c7)

0.16.2 (2024-07-14)

Bug Fixes

  • add biotype vaultRNA_primary_transcript (#180) (d59783c)
  • add biotype vaultRNA_primary_transcript (#183) (4345377)
  • add partial field to cdot json representation struct (#179) (113a06a)
  • add Serialize to data::cdot::json representations (#176) (2de1b8a)

0.16.1 (2024-06-10)

Bug Fixes

  • use array instead of Vec for Codon representation (#169) (e455168)

Performance Improvements

  • cache mappers, avoid allocations, codons are arrays (#172) (34acaf4)

0.16.0 (2024-03-05)

Features

0.15.0 (2024-02-08)

Miscellaneous Chores

0.14.1 (2023-11-19)

Bug Fixes

0.14.0 (2023-11-19)

Features

0.13.2 (2023-11-08)

Bug Fixes

  • add more biotypes from cdot JSON for vep110 release (#141) (4cb7cb6)

0.13.1 (2023-11-08)

Bug Fixes

  • adding back missing Gene::biotype member (#138) (84db645)

0.13.0 (2023-11-08)

Features

0.12.0 (2023-10-21)

Features

Bug Fixes

0.11.0 (2023-09-18)

Features

  • various dependency updates, bump version to 0.11.0 (#128) (09ed016)

0.10.1 (2023-07-04)

Bug Fixes

  • properly configure dependabot for noodles (#119) (b539921)

0.10.0 (2023-07-04)

Miscellaneous Chores

0.9.0 (2023-06-12)

Features

  • express existing thread safety (as most things are immutable) (#115) (0d6f241)

0.8.2 (2023-06-08)

Code Refactoring

0.8.1 (2023-05-23)

Bug Fixes

0.8.0 (2023-05-23)

Features

0.7.0 (2023-04-24)

Features

  • proper error handling with enums and thiserror (#69) (#103) (add8248)

0.6.2 (2023-04-18)

Bug Fixes

  • issue with non-dup insertion at start of protein (#99) (#100) (bc5b5cf)

0.6.1 (2023-04-06)

Bug Fixes

  • cases where dup/inv goes beyond CDS (#89) (5d951b1)
  • only warn on combining RefAlt with whole gene deletion (#92) (bff6c72)
  • out of bound panic in case of long deletions (#91) (f0bcaa6)
  • out of bounds issue for protein sequence creation (#93) (a40a5f5)
  • out of bounds issue on 5'-to-3' shifting beyond CDS (#94) (4fccdb8)
  • problem with variants in multi-stop codon txs (#95) (#96) (f25658c)

0.6.0 (2023-04-05)

Features

  • make some tables visible in hgvs::sequences (#87) (d81bf8c)

0.5.2 (2023-04-04)

Performance Improvements

0.5.1 (2023-04-03)

Performance Improvements

0.5.0 (2023-03-31)

Features

  • allow configuring that there is no genome sequence (#65) (cd5b7bb)
  • replacing usages of unwrap() with expect or Result (#70) (#73) (94d6f88)

Bug Fixes

  • case of missing stop codon (in particular ENSEMBL) (#72) (a44e28c)
  • fixing wrong validation assumption about insertions (#64) (f58ff53)
  • issue with transcripts missing stop codon (#67) (f70bb91)
  • return error if problem in normalization (#71) (b656d2a)
  • return error in normalization instead of unwrap() (#68) (8144db6)

0.4.0 (2023-03-27)

Features

  • allow for disabling renormalization (#53) (b2f5dbe)
  • improved normalizer configuration (#52) (2db5e92)
  • make sequences module public (#54) (cfbb134)
  • more comprehensive clone for field-less enums (#58) (3ada6b2)

Bug Fixes

  • cases of empty sequence (#61) (0a6a109)
  • fixing projection issues with cdot::json::Provider (#55) (edd0de9)
  • fixing wrong validation assumption about insertions (#62) (bf027dc)
  • interpret replace_reference condition (#49) (8326a55)
  • issue with out of bounds deletion (#59) (475398d)
  • remove ref length validation (#57) (763b7a3)
  • truncate AA insertion at stop codon (#60) (54231b9)

0.3.1 (2023-03-13)

Bug Fixes

  • deriving PartialEq and Eq for enums (#47) (abd946e)

0.3.0 (2023-03-13)

Features

0.2.0 (2023-03-06)

Features

  • implement PartialEq for Assembly (#40) (8808211)

Bug Fixes

  • git lfs untrack 'src/static_data/**/.json' (#41) (fa1af68)

0.1.1 (2023-03-03)

Bug Fixes

0.1.0 (2023-03-03)

Features

Bug Fixes

  • variant mapper g_to_t used wrong logic (#32) (040e2d3)

Changelog