diff --git a/docs/file_formats.rst b/docs/file_formats.rst index 94befa7..9c01a4f 100644 --- a/docs/file_formats.rst +++ b/docs/file_formats.rst @@ -10,9 +10,9 @@ In the case of the non-native TSV format, this section documents how the file fo Overall, the aim of clinvar-this is to support you in submitting data easily with restrictions (see :ref:`limitations`). If you need the full functionality of the NCBI ClinVar API then please consider using the ``clinvar_api`` Python module. --------------------------- -Small Variant TSV (Native) --------------------------- +----------------------------- +Sequence Variant TSV (Native) +----------------------------- The following headers are required. Clinvar-this will recognize the TSV file format based on these headers. diff --git a/requirements/base.txt b/requirements/base.txt index b619258..8f8697c 100644 --- a/requirements/base.txt +++ b/requirements/base.txt @@ -7,3 +7,6 @@ click >=8.1.3, <9.0 toml >=0.10.2, <0.11 tabulate >= 0.9.0 jsonschema >= 4.17.0, <5.0 + +pandas >=1.5 +phenopackets >=2