From d486897af89396d26c37de4c936fa356b1bb0641 Mon Sep 17 00:00:00 2001
From: Manuel Holtgrewe <manuel.holtgrewe@bih-charite.de>
Date: Mon, 23 Oct 2023 20:19:57 +0200
Subject: [PATCH] fix: bump noodles-vcf to v0.43

---
 Cargo.lock | 51 ++++++++++++++++++++++++++++++++++++---------------
 Cargo.toml |  2 +-
 2 files changed, 37 insertions(+), 16 deletions(-)

diff --git a/Cargo.lock b/Cargo.lock
index 4d012823..97c561c6 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -198,14 +198,15 @@ checksum = "f26201604c87b1e01bd3d98f8d5d9a8fcbb815e8cedb41ffccbeb4bf593a35fe"
 
 [[package]]
 name = "ahash"
-version = "0.8.3"
+version = "0.8.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2c99f64d1e06488f620f932677e24bc6e2897582980441ae90a671415bd7ec2f"
+checksum = "72832d73be48bac96a5d7944568f305d829ed55b0ce3b483647089dfaf6cf704"
 dependencies = [
  "cfg-if",
  "getrandom",
  "once_cell",
  "version_check",
+ "zerocopy",
 ]
 
 [[package]]
@@ -368,9 +369,9 @@ dependencies = [
 
 [[package]]
 name = "base64"
-version = "0.21.4"
+version = "0.21.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9ba43ea6f343b788c8764558649e08df62f86c6ef251fdaeb1ffd010a9ae50a2"
+checksum = "35636a1494ede3b646cc98f74f8e62c773a38a659ebc777a2cf26b9b74171df9"
 
 [[package]]
 name = "bgzip"
@@ -574,9 +575,9 @@ dependencies = [
 
 [[package]]
 name = "clap-verbosity-flag"
-version = "2.0.1"
+version = "2.1.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1eef05769009513df2eb1c3b4613e7fad873a14c600ff025b08f250f59fee7de"
+checksum = "e5fdbb015d790cfb378aca82caf9cc52a38be96a7eecdb92f31b4366a8afc019"
 dependencies = [
  "clap",
  "log",
@@ -1374,9 +1375,9 @@ dependencies = [
 
 [[package]]
 name = "mio"
-version = "0.8.8"
+version = "0.8.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "927a765cd3fc26206e66b296465fa9d3e5ab003e651c1b3c060e7956d96b19d2"
+checksum = "3dce281c5e46beae905d4de1870d8b1509a9142b62eedf18b443b011ca8343d0"
 dependencies = [
  "libc",
  "log",
@@ -1455,9 +1456,9 @@ dependencies = [
 
 [[package]]
 name = "noodles-vcf"
-version = "0.42.0"
+version = "0.43.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f3400ba59844268d1f3e842ca4dd999c08cd04180db1b413d689bb7ea92ece08"
+checksum = "f13f0225114584f7ab147f146532dccc584e810006a4dfb275544957e7722884"
 dependencies = [
  "indexmap 2.0.2",
  "memchr",
@@ -1585,9 +1586,9 @@ checksum = "26072860ba924cbfa98ea39c8c19b4dd6a4a25423dbdf219c1eca91aa0cf6964"
 
 [[package]]
 name = "portable-atomic"
-version = "1.4.3"
+version = "1.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "31114a898e107c51bb1609ffaf55a0e011cf6a4d7f1170d0015a165082c0338b"
+checksum = "b559898e0b4931ed2d3b959ab0c2da4d99cc644c4b0b1a35b4d344027f474023"
 
 [[package]]
 name = "powerfmt"
@@ -2237,12 +2238,12 @@ dependencies = [
 
 [[package]]
 name = "tracing-log"
-version = "0.1.3"
+version = "0.1.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "78ddad33d2d10b1ed7eb9d1f518a5674713876e97e5bb9b7345a7984fbb4f922"
+checksum = "f751112709b4e791d8ce53e32c4ed2d353565a795ce84da2285393f41557bdf2"
 dependencies = [
- "lazy_static",
  "log",
+ "once_cell",
  "tracing-core",
 ]
 
@@ -2587,6 +2588,26 @@ version = "0.5.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "09041cd90cf85f7f8b2df60c646f853b7f535ce68f85244eb6731cf89fa498ec"
 
+[[package]]
+name = "zerocopy"
+version = "0.7.11"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "4c19fae0c8a9efc6a8281f2e623db8af1db9e57852e04cde3e754dd2dc29340f"
+dependencies = [
+ "zerocopy-derive",
+]
+
+[[package]]
+name = "zerocopy-derive"
+version = "0.7.11"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "fc56589e9ddd1f1c28d4b4b5c773ce232910a6bb67a70133d61c9e347585efe9"
+dependencies = [
+ "proc-macro2",
+ "quote",
+ "syn 2.0.38",
+]
+
 [[package]]
 name = "zstd"
 version = "0.12.4"
diff --git a/Cargo.toml b/Cargo.toml
index 8b44d2ba..b6035ba2 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -38,7 +38,7 @@ noodles-bgzf = "0.25"
 noodles-core = "0.12"
 noodles-csi = "0.25"
 noodles-tabix = "0.31"
-noodles-vcf = "0.42"
+noodles-vcf = "0.43"
 prost = "0.12"
 rayon = "1.8"
 rocksdb-utils-lookup = "0.3"