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Update noodles group to current versions. Quite a lot of the API changed since the last time the noodles group was updated for annonars, but in short:
record.chromosome()
is nowrecord.reference_sequence_name()
and is also a String (or rather &str),record.position()
is nowrecord.variant_start()
(and is an optional position now, because apparently for telomeric breakends there is no variant_start),lazy::Record
is now the defaultRecord
while the oldRecord
is nowRecordBuf
; there's also aRecord
trait, which is currently unused.bgzf::io::Seek
constraints etcIndexSet<String>
or similar (e.g.Filters
)