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Refactor gene information interfaces #339

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6 tasks
holtgrewe opened this issue Nov 27, 2023 · 0 comments
Open
6 tasks

Refactor gene information interfaces #339

holtgrewe opened this issue Nov 27, 2023 · 0 comments
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enhancement New feature or request

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@holtgrewe
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Is your feature request related to a problem? Please describe.
The current gene information retrieval interfaces are a bit problematic. See below.

Describe the solution you'd like
Adjust them as follows:

  • do not return maps from HGNC ID to information but rather lists of information objects with HGNC ID being a member
  • retrieve "slimmer" version by default
  • allow to switch on / off certain sections so not the full information is retrieved
  • store "id only" information in an additional column family for faster iteration
  • make all data structures on the interfaces to external protocol buffers
  • implement pagination for retrieving genes

Describe alternatives you've considered
N/A

Additional context
N/A

@holtgrewe holtgrewe added the enhancement New feature or request label Nov 27, 2023
@holtgrewe holtgrewe moved this to To triage in Release Planning Jan 24, 2024
@holtgrewe holtgrewe moved this from To triage to Backlog in Release Planning Jan 24, 2024
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Labels
enhancement New feature or request
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Status: Backlog
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