tox.ini

[tox]
envlist = py27,translations,docs,ui,build-artifacts,py3
skip_missing_interpreters = True

[testenv]
description = Default testing environment, run unit test suite
deps =
    --requirement=requirements.dev.txt
    pytest-cov
setenv =
    TESTING = true
passenv =
    FLASK_APP
    LANG
    PERSISTENCE_DIR
    PG*
    REDIS*
    SECRET_KEY
    SQLALCHEMY_DATABASE_TEST_URI
    TRAVIS*
    CI
# ignore all tests that require celery in background
# todo: fix tests and remove `--ignore`
commands =
    py.test \
        --ignore tests/integration_tests \
        --cov portal \
        --cov-report xml:"{toxinidir}/coverage.xml" \

        --ignore tests/test_assessment_engine.py \
        --ignore tests/test_clinical.py \
        --ignore tests/test_consent.py \
        --ignore tests/test_coredata.py \
        --ignore tests/test_communication.py \
        --ignore tests/test_date_tools.py \
        --ignore tests/test_demographics.py \
        --ignore tests/test_encounter.py \
        --ignore tests/test_exclusion_persistence.py \
        --ignore tests/test_fhir.py \
        --ignore tests/test_group.py \
        --ignore tests/test_healthcheck.py \
        --ignore tests/test_i18n.py \
        --ignore tests/test_identifier.py \
        --ignore tests/test_intervention.py \
        --ignore tests/test_model_persistence.py \
        --ignore tests/test_next_step.py \
        --ignore tests/test_notification.py \
        --ignore tests/test_organization.py \
        --ignore tests/test_patch_flask_user.py \
        --ignore tests/test_patient.py \
        --ignore tests/test_portal.py \
        --ignore tests/test_practitioner.py \
        --ignore tests/test_procedure.py \
        --ignore tests/test_qb_timeline.py \
        --ignore tests/test_questionnaire_bank.py \
        --ignore tests/test_recur.py \
        --ignore tests/test_reference.py \
        --ignore tests/test_reporting.py \
        --ignore tests/test_research_protocol.py \
        --ignore tests/test_scheduled_job.py \
        --ignore tests/test_site_persistence.py \
        --ignore tests/test_table_preference.py \
        --ignore tests/test_telecom.py \
        --ignore tests/test_timeout.py \
        --ignore tests/test_tou.py \
        --ignore tests/test_truenth.py \
        --ignore tests/test_user_document.py \
        --ignore tests/test_user.py \
    []
allowlist_externals = sh

[testenv:celery_background]
description = Environment for tests that require celery running in background
commands =
    # start celery in background, only on continuous integration
    # Todo: migrate tests to fixtures
    sh -c ' \
        if [ "$CI" = true ]; then \
            celery \
                --app portal.celery_worker.celery \
            worker \
                --detach \
                --queues celery,low_priority \
                --loglevel info ; \
        fi \
    '
    py.test \
        --cov portal \
        --cov-report xml:"{toxinidir}/coverage.xml" \
        --timeout=3600 \
        --timeout_method=thread \

        tests/test_assessment_engine.py \
        tests/test_clinical.py \
        tests/test_consent.py \
        tests/test_coredata.py \
        tests/test_communication.py \
        tests/test_date_tools.py \
        tests/test_demographics.py \
        tests/test_encounter.py \
        tests/test_exclusion_persistence.py \
        tests/test_fhir.py \
        tests/test_group.py \
        tests/test_healthcheck.py \
        tests/test_i18n.py \
        tests/test_identifier.py \
        tests/test_intervention.py \
        tests/test_model_persistence.py \
        tests/test_next_step.py \
        tests/test_notification.py \
        tests/test_organization.py \
        tests/test_patch_flask_user.py \
        tests/test_patient.py \
        tests/test_portal.py \
        tests/test_practitioner.py \
        tests/test_procedure.py \
        tests/test_qb_timeline.py \
        tests/test_questionnaire_bank.py \
        tests/test_recur.py \
        tests/test_reference.py \
        tests/test_reporting.py \
        tests/test_research_protocol.py \
        tests/test_scheduled_job.py \
        tests/test_site_persistence.py \
        tests/test_table_preference.py \
        tests/test_telecom.py \
        tests/test_timeout.py \
        tests/test_tou.py \
        tests/test_truenth.py \
        tests/test_user_document.py \
        tests/test_user.py \
    []

[testenv:docs]
description = Test documentation generation
changedir = docs
commands =
    sphinx-build \
        -W \
        -n \
        -b html \
        -d {envtmpdir}/doctrees \
    source {envtmpdir}/html

[testenv:ui]
description = Run selenium tests
passenv =
    {[testenv]passenv}
    DISPLAY
    SAUCE_*
commands =
    sh -c "{toxinidir}/bin/build-frontend-files.sh"
    py.test tests/integration_tests/ []

[testenv:build-artifacts]
description = Build docker artifacts and prerequisites (debian package) test deploy and check health
deps = docker-compose>=1.19
skip_install = True
passenv =
    DOCKER_IMAGE_TAG
    DOCKER_REPOSITORY
setenv =
    SECRET_KEY = {env:PYTHONHASHSEED}
    SERVER_NAME = localhost:8008
    EXTERNAL_PORT = 8008
    PORTAL_ENV_FILE = {envtmpdir}/portal.env
    COMPOSE_PROJECT_NAME = tox-{envname}
# wait until after first healthcheck occurs
# check health and cleanup
commands =
    sh -c "{toxinidir}/tests/test_deploy.sh"

[testenv:translations]
description = Extract frontend and backend strings
setenv =
    {[testenv]setenv}
    FLASK_APP = {toxinidir}/manage.py
commands =
    sh -c "{toxinidir}/bin/extract-frontend-strings.sh"
    flask sync
    flask extract-i18n