diff --git a/proteore_tools.yaml b/proteore_tools.yaml new file mode 100644 index 00000000..31244d7f --- /dev/null +++ b/proteore_tools.yaml @@ -0,0 +1,92 @@ +--- +install_repository_dependencies: true +install_resolver_dependencies: true +install_tool_dependencies: false + +tools: + +## ProteoRE Data Manipulation + + - name: proteore_id_converter + owner: proteore + tool_panel_section_label: ProteoRE + + - name: proteore_filter_keywords_values + owner: proteore + tool_panel_section_label: ProteoRE + +## ProteoRE Get Features/Annotations + + - name: proteore_prot_features_3orga + owner: proteore + tool_panel_section_label: ProteoRE + + - name: proteore_prot_features + owner: proteore + tool_panel_section_label: ProteoRE + + - name: proteore_expression_levels_by_tissue + owner: proteore + tool_panel_section_label: ProteoRE + + - name: proteore_expression_rnaseq_abbased + owner: proteore + tool_panel_section_label: ProteoRE + + - name: proteore_tissue_specific_expression_data + owner: proteore + tool_panel_section_label: ProteoRE + + - name: proteore_ms_observation_pepatlas + owner: proteore + tool_panel_section_label: ProteoRE + + - name: proteore_get_unique_peptide_srm_method + owner: proteore + tool_panel_section_label: ProteoRE + +## ProteoRE Functional Analysis + + - name: proteore_goprofiles + owner: proteore + tool_panel_section_label: ProteoRE + + - name: proteore_clusterprofiler + owner: proteore + tool_panel_section_label: ProteoRE + + - name: proteore_go_terms_enrich_comparison + owner: proteore + tool_panel_section_label: ProteoRE + + - name: proteore_topgo + owner: proteore + tool_panel_section_label: ProteoRE + +## ProteoRE Pathway Analysis + + - name: proteore_reactome + owner: proteore + tool_panel_section_label: ProteoRE + + - name: proteore_kegg_pathways_coverage + owner: proteore + tool_panel_section_label: ProteoRE + + - name: proteore_maps_visualization + owner: proteore + tool_panel_section_label: ProteoRE + + - name: proteore_build_protein_interaction_maps + owner: proteore + tool_panel_section_label: ProteoRE + +## ProteoRE Visualization + + - name: proteore_venn_diagram + owner: proteore + tool_panel_section_label: ProteoRE + + - name: proteore_heatmap_visualization + owner: proteore + tool_panel_section_label: ProteoRE