From 0b6fc0472fb8951ebc753402d291ff543e3bf7a0 Mon Sep 17 00:00:00 2001 From: cat-bro Date: Wed, 9 Oct 2024 17:58:23 +1100 Subject: [PATCH] oom updates 20241009 --- .../production/total_perspective_vortex/tools.yml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml index 10c66fa58..6d498da09 100644 --- a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml +++ b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml @@ -1057,6 +1057,9 @@ tools: mem: 62 params: singularity_enabled: true + toolshed.g2.bx.psu.edu/repos/galaxy-australia/kmc/.*: + cores: 4 + mem: 15.3 toolshed.g2.bx.psu.edu/repos/galaxy-australia/metawrapmg_binning/metawrapmg_binning/.*: context: test_cores: 10 @@ -1440,6 +1443,8 @@ tools: params: singularity_enabled: true toolshed.g2.bx.psu.edu/repos/iuc/checkm_.*: + cores: 4 + mem: 15.3 params: singularity_enabled: true toolshed.g2.bx.psu.edu/repos/iuc/chromeister/chromeister/.*: @@ -1631,6 +1636,8 @@ tools: toolshed.g2.bx.psu.edu/repos/iuc/gprofiler_gost/gprofiler_gost/.*: params: singularity_enabled: true + toolshed.g2.bx.psu.edu/repos/iuc/graphlan_annotate/graphlan_annotate/.*: + mem: 12 toolshed.g2.bx.psu.edu/repos/iuc/gtdbtk_classify_wf/gtdbtk_classify_wf/.*: cores: 32 mem: 122.8 @@ -2478,6 +2485,8 @@ tools: params: singularity_enabled: true toolshed.g2.bx.psu.edu/repos/iuc/ragtag/ragtag/.*: + cores: 4 + mem: 15.3 params: singularity_enabled: true toolshed.g2.bx.psu.edu/repos/iuc/rapidnj/rapidnj/.*: @@ -3374,8 +3383,11 @@ tools: cores: 8 mem: 30.7 toolshed.g2.bx.psu.edu/repos/rnateam/targetfinder/targetfinder/.*: + cores: 4 + mem: 15.3 params: tmp_dir: true + singularity_enabled: true toolshed.g2.bx.psu.edu/repos/simon-gladman/velvetoptimiser/velvetoptimiser/.*: cores: 4 mem: 15.3