From 0119bd5f8b1606627f5a2ad19c56f6c525f7c527 Mon Sep 17 00:00:00 2001 From: cat-bro Date: Fri, 8 Nov 2024 13:32:04 +1100 Subject: [PATCH] singularity for newly requested tools --- .../production/total_perspective_vortex/tools.yml | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml index eb2d3bf9..6854ef45 100644 --- a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml +++ b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml @@ -274,6 +274,9 @@ tools: params: singularity_enabled: true tmp_dir: true + toolshed.g2.bx.psu.edu/repos/bgruening/itsx/itsx/.*: + params: + singularity_enabled: true toolshed.g2.bx.psu.edu/repos/bgruening/mitohifi/mitohifi/.*: cores: 8 mem: 24 # TODO: this is 8/16 in shared db. If no further problems update this in shared db @@ -1429,6 +1432,9 @@ tools: toolshed.g2.bx.psu.edu/repos/iuc/cat_bins/cat_bins/.*: cores: 5 mem: 19.1 + toolshed.g2.bx.psu.edu/repos/iuc/cemitool/cemitool/.*: + params: + singularity_enabled: true toolshed.g2.bx.psu.edu/repos/iuc/chira_.*: params: singularity_enabled: true @@ -1553,6 +1559,9 @@ tools: if: input_size < 0.01 cores: 1 mem: 3.8 + toolshed.g2.bx.psu.edu/repos/iuc/fastani/fastani/.*: + params: + singularity_enabled: true toolshed.g2.bx.psu.edu/repos/iuc/feelnc/feelnc/.*: params: singularity_enabled: true