From a1aab2d87c53b3c551063449718e8d6b5845def9 Mon Sep 17 00:00:00 2001
From: cat-bro <cathjb@gmail.com>
Date: Fri, 25 Oct 2024 15:01:41 +1100
Subject: [PATCH] add custom training rule for fgenesh

---
 .../production/total_perspective_vortex/tools.yml           | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml
index 175957e40..ba6171d42 100644
--- a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml
+++ b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml
@@ -3561,6 +3561,12 @@ tools:
         - training-exempt  # skips user training role rules within users.yml
       require:
         - pulsar-high-mem2
+    rules:
+    - id: fgenesh_annotate_training_rule  # custom training rule for fgenesh - regular training rules are in users.yml.j2
+      if: |
+        user and any([role.name.startswith('training') for role in user.all_roles() if not role.deleted])
+      cores: 4
+      mem: 25
   fgenesh_merge:
     inherits: fgenesh_tool
   fgenesh_split: