From f7349293d1b9d6947fc34bc2e21118ebd7aeeea2 Mon Sep 17 00:00:00 2001 From: cat-bro Date: Mon, 2 Dec 2024 11:51:27 +1100 Subject: [PATCH] update memory for fasta_stats this is not multithreaded and it runs out of memory for large inputs --- .../production/total_perspective_vortex/tools.yml | 8 +------- 1 file changed, 1 insertion(+), 7 deletions(-) diff --git a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml index 7d5c8f8f..be55fb2f 100644 --- a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml +++ b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml @@ -1560,13 +1560,7 @@ tools: params: singularity_enabled: true toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/.*: - cores: 3 - mem: 11.5 - rules: - - id: fasta-stats_small_input_rule - if: input_size < 0.01 - cores: 1 - mem: 3.8 + mem: min(3 * input_size + 2, 40) toolshed.g2.bx.psu.edu/repos/iuc/fastani/fastani/.*: params: singularity_enabled: true