From f7c18cbfcf207dae4b01cd2b72d4884bdaa2f7d8 Mon Sep 17 00:00:00 2001 From: cat-bro Date: Fri, 29 Nov 2024 15:44:14 +1100 Subject: [PATCH] singularity for infernal and all krakentools tools --- .../production/total_perspective_vortex/tools.yml | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml index 7d5c8f8f..32e6b387 100644 --- a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml +++ b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml @@ -266,6 +266,9 @@ tools: #scheduling: # require: # - pulsar-high-mem1 + toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_.*: + params: + singularity_enabled: true toolshed.g2.bx.psu.edu/repos/bgruening/interproscan/interproscan/.*: context: max_concurrent_job_count_for_tool_user: 3 @@ -1869,6 +1872,9 @@ tools: toolshed.g2.bx.psu.edu/repos/iuc/kraken_biom/kraken_biom/.*: params: singularity_enabled: true + toolshed.g2.bx.psu.edu/repos/iuc/krakentools_.*: + params: + singularity_enabled: true toolshed.g2.bx.psu.edu/repos/iuc/krakentools_extract_kraken_reads/krakentools_extract_kraken_reads/.*: mem: 10 params: